Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6A8G
DownloadVisualize
BU of 6a8g by Molmil
The crystal structure of muPAin-1-IG in complex with muPA-SPD at pH8.5
Descriptor: PHOSPHATE ION, Urokinase-type plasminogen activator chain B, muPAin-1-IG
Authors:Wang, D, Yang, Y.S, Jiang, L.G, Huang, M.D, Li, J.Y, Andreasen, P.A, Xu, P, Chen, Z.
Deposit date:2018-07-08
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Suppression of Tumor Growth and Metastases by Targeted Intervention in Urokinase Activity with Cyclic Peptides.
J.Med.Chem., 62, 2019
6A8N
DownloadVisualize
BU of 6a8n by Molmil
The crystal structure of muPAin-1-IG-2 in complex with muPA-SPD at pH8.5
Descriptor: CYS-PRO-ALA-TYR-SER-ARG-TYR-ILE-GLY-CYS, Urokinase-type plasminogen activator B
Authors:Wang, D, Yang, Y.S, Jiang, L.G, Huang, M.D, Li, J.Y, Andreasen, P.A, Xu, P, Chen, Z.
Deposit date:2018-07-09
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.489 Å)
Cite:Suppression of Tumor Growth and Metastases by Targeted Intervention in Urokinase Activity with Cyclic Peptides.
J.Med.Chem., 62, 2019
7MEM
DownloadVisualize
BU of 7mem by Molmil
CryoEM structure of monoclonal Fab 045-09 2B05 binding the lateral patch of influenza virus H1 HA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of monoclonal antibody 045-09 2B05, ...
Authors:Han, J, Ward, A.
Deposit date:2021-04-06
Release date:2021-07-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:First exposure to the pandemic H1N1 virus induced broadly neutralizing antibodies targeting hemagglutinin head epitopes.
Sci Transl Med, 13, 2021
3D27
DownloadVisualize
BU of 3d27 by Molmil
E. coli methionine aminopeptidase with Fe inhibitor W29
Descriptor: 4-(3-ethylthiophen-2-yl)benzene-1,2-diol, MANGANESE (II) ION, Methionine aminopeptidase
Authors:Ye, Q.Z, Chai, S, He, H.Z.
Deposit date:2008-05-07
Release date:2008-08-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of inhibitors of Escherichia coli methionine aminopeptidase with the Fe(II)-form selectivity and antibacterial activity.
J.Med.Chem., 51, 2008
3H0H
DownloadVisualize
BU of 3h0h by Molmil
human Fyn SH3 domain R96I mutant, crystal form I
Descriptor: Proto-oncogene tyrosine-protein kinase Fyn, TETRAETHYLENE GLYCOL
Authors:Dumas, C, Strub, M.-P, Arold, S.T.
Deposit date:2009-04-09
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Synergy and allostery in ligand binding by HIV-1 Nef.
Biochem.J., 478, 2021
3HNB
DownloadVisualize
BU of 3hnb by Molmil
Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor
Descriptor: (2R)-1-(2,4-dichlorophenoxy)-3-[(2E)-2-imino-3-(2-piperidin-1-ylethyl)-2,3-dihydro-1H-benzimidazol-1-yl]propan-2-ol, Coagulation factor VIII
Authors:Liu, Z, Yuan, C.
Deposit date:2009-05-31
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding.
J.Biol.Chem., 285, 2010
3HOB
DownloadVisualize
BU of 3hob by Molmil
Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor
Descriptor: Coagulation factor VIII
Authors:Liu, Z, Yuan, C.
Deposit date:2009-06-01
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding.
J.Biol.Chem., 285, 2010
8HJA
DownloadVisualize
BU of 8hja by Molmil
The crystal structure of syn_CdgR-(c-di-GMP) from Synechocystis sp. PCC 6803
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), c-di-GMP receptor
Authors:Zeng, X, Peng, Y.J.
Deposit date:2022-11-22
Release date:2023-03-29
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:A c-di-GMP binding effector controls cell size in a cyanobacterium.
Proc.Natl.Acad.Sci.USA, 120, 2023
3HNY
DownloadVisualize
BU of 3hny by Molmil
Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor
Descriptor: Coagulation factor VIII
Authors:Liu, Z, Yuan, C.
Deposit date:2009-06-01
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding.
J.Biol.Chem., 285, 2010
3H0F
DownloadVisualize
BU of 3h0f by Molmil
Crystal structure of the human Fyn SH3 R96W mutant
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, Proto-oncogene tyrosine-protein kinase Fyn
Authors:Ponchon, L, Hoh, F, Labesse, G, Dumas, C, Arold, S.T.
Deposit date:2009-04-09
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Synergy and allostery in ligand binding by HIV-1 Nef.
Biochem.J., 478, 2021
3H0I
DownloadVisualize
BU of 3h0i by Molmil
human Fyn SH3 domain R96I mutant, crystal form II
Descriptor: Proto-oncogene tyrosine-protein kinase Fyn
Authors:Dumas, C, Strub, M.-P, Arold, S.T.
Deposit date:2009-04-09
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Synergy and allostery in ligand binding by HIV-1 Nef.
Biochem.J., 478, 2021
1LDP
DownloadVisualize
BU of 1ldp by Molmil
CRYSTAL STRUCTURE OF MURINE MHC CLASS I H-2LD WITH A MIXTURE OF BOUND PEPTIDES
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, MHC CLASS I H-2LD, ...
Authors:Speir, J.A, Wilson, I.A.
Deposit date:1998-03-15
Release date:1998-06-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of 2C TCR allorecognition of H-2Ld peptide complexes.
Immunity, 8, 1998
5WQ6
DownloadVisualize
BU of 5wq6 by Molmil
Crystal Structure of hMNDA-PYD with MBP tag
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, MBP tagged hMNDA-PYD, ...
Authors:Jin, T.C, Xiao, T.S.
Deposit date:2016-11-23
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.648 Å)
Cite:Design of an expression system to enhance MBP-mediated crystallization
Sci Rep, 7, 2017
5WPZ
DownloadVisualize
BU of 5wpz by Molmil
Crystal structure of MNDA PYD with MBP tag
Descriptor: MBP-hMNDA-PYD, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Jin, T.C, Xiao, T.S.
Deposit date:2016-11-22
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design of an expression system to enhance MBP-mediated crystallization
Sci Rep, 7, 2017
4O03
DownloadVisualize
BU of 4o03 by Molmil
Crystal structure of Ca2+ bound prothrombin deletion mutant residues 146-167
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Prothrombin
Authors:Pozzi, N, Chen, Z, Shropshire, D.B, Pelc, L.A, Di Cera, E.
Deposit date:2013-12-13
Release date:2014-05-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:The linker connecting the two kringles plays a key role in prothrombin activation.
Proc.Natl.Acad.Sci.USA, 111, 2014
2NB7
DownloadVisualize
BU of 2nb7 by Molmil
Solution structure of N-terminal extramembrane domain of SH protein
Descriptor: Small hydrophobic protein
Authors:Li, Y, To, J, Surya, W, Torres, J.
Deposit date:2016-01-26
Release date:2016-02-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
2NB8
DownloadVisualize
BU of 2nb8 by Molmil
Solution structure of C-terminal extramembrane domain of SH protein
Descriptor: Small hydrophobic protein
Authors:Li, Y, To, J, Surya, W, Torres, J.
Deposit date:2016-01-26
Release date:2016-02-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.
J.Virol., 88, 2014
4D8D
DownloadVisualize
BU of 4d8d by Molmil
Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant
Descriptor: GLYCEROL, Protein Nef, Tyrosine-protein kinase Fyn
Authors:Arold, S.T, Hoh, F, Dumas, C.
Deposit date:2012-01-10
Release date:2013-01-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5201 Å)
Cite:Synergy and allostery in ligand binding by HIV-1 Nef.
Biochem.J., 478, 2021
6ITE
DownloadVisualize
BU of 6ite by Molmil
Crystal structure of group A Streptococcal surface dehydrogenase (SDH)
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Yuan, C, Li, R, Huang, M.D.
Deposit date:2018-11-21
Release date:2019-09-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Structural determination of group A Streptococcal surface dehydrogenase and characterization of its interaction with urokinase-type plasminogen activator receptor.
Biochem.Biophys.Res.Commun., 510, 2019
5F4H
DownloadVisualize
BU of 5f4h by Molmil
Archael RuvB-like Holiday junction helicase
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Nucleotide binding protein PINc
Authors:Zhai, B, DuPrez, K.T, Doukov, T.I, Shen, Y, Fan, L.
Deposit date:2015-12-03
Release date:2016-12-21
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Structure and Function of a Novel ATPase that Interacts with Holliday Junction Resolvase Hjc and Promotes Branch Migration.
J. Mol. Biol., 429, 2017
6ISQ
DownloadVisualize
BU of 6isq by Molmil
structure of Lipase mutant with oxided Cys-His-Asp catalytic triad
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ISOPROPYL ALCOHOL, ...
Authors:Cen, Y.X, Zhou, J.H, Wu, Q.
Deposit date:2018-11-18
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Artificial cysteine-lipases with high activity and altered catalytic mechanism created by laboratory evolution.
Nat Commun, 10, 2019
6ISR
DownloadVisualize
BU of 6isr by Molmil
structure of lipase mutant with Cys-His-Asp catalytic triad
Descriptor: DI(HYDROXYETHYL)ETHER, Lipase B, NICKEL (II) ION, ...
Authors:Cen, Y.X, Zhou, J.H, Wu, Q.
Deposit date:2018-11-18
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Artificial cysteine-lipases with high activity and altered catalytic mechanism created by laboratory evolution.
Nat Commun, 10, 2019
6ISP
DownloadVisualize
BU of 6isp by Molmil
structure of Candida antarctica Lipase B mutant
Descriptor: CALCIUM ION, Lipase B, N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
Authors:Cen, Y.X, Zhou, J.H, Wu, Q.
Deposit date:2018-11-18
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Artificial cysteine-lipases with high activity and altered catalytic mechanism created by laboratory evolution.
Nat Commun, 10, 2019
5GMP
DownloadVisualize
BU of 5gmp by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with XTF-262
Descriptor: Epidermal growth factor receptor, N-[3-[2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-7-oxidanylidene-pyrido[2,3-d]pyrimidin-8-yl]phenyl]prop-2-enamide
Authors:Yan, X.E, Yun, C.H.
Deposit date:2016-07-14
Release date:2017-06-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.797 Å)
Cite:A structure-guided optimization of pyrido[2,3-d]pyrimidin-7-ones as selective inhibitors of EGFR(L858R/T790M) mutant with improved pharmacokinetic properties.
Eur J Med Chem, 126, 2017
5HDO
DownloadVisualize
BU of 5hdo by Molmil
Crystal structure of a nanobody raised against urokinase-type plasminogen activator
Descriptor: Anti-HCV NS3/4A serine protease immoglobulin heavy chain, CHLORIDE ION, SULFATE ION
Authors:Kromann-Hansen, T.
Deposit date:2016-01-05
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:A Camelid-derived Antibody Fragment Targeting the Active Site of a Serine Protease Balances between Inhibitor and Substrate Behavior.
J.Biol.Chem., 291, 2016

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon