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- PDB-1uvo: Structure Of The Complex Of Porcine Pancreatic Elastase In Comple... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1uvo | ||||||
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Title | Structure Of The Complex Of Porcine Pancreatic Elastase In Complex With Cadmium Refined At 1.85 A Resolution (Crystal A) | ||||||
![]() | ELASTASE 1 | ||||||
![]() | HYDROLASE / CHYMOTRYPSIN-FOLD / BETA-BARREL / CADMIUM BINDING / DATA COLLECTION WAVELENGTH 1A | ||||||
Function / homology | ![]() pancreatic elastase / serine-type endopeptidase activity / proteolysis / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Weiss, M.S. / Panjikar, S. / Mueller-Dieckmann, C. / Tucker, P.A. | ||||||
![]() | ![]() Title: On the Influence of the Incident Photon Energy on the Radiation Damage in Crystalline Biological Samples Authors: Weiss, M.S. / Panjikar, S. / Mueller-Dieckmann, C. / Tucker, P.A. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 66.1 KB | Display | ![]() |
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PDB format | ![]() | 47.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 417.9 KB | Display | ![]() |
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Full document | ![]() | 418.1 KB | Display | |
Data in XML | ![]() | 6.9 KB | Display | |
Data in CIF | ![]() | 10.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1uvpC ![]() 1lkbS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 25929.016 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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-Non-polymers , 5 types, 226 molecules ![](data/chem/img/ACT.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/CD.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/CD.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-ACT / |
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#3: Chemical | ChemComp-GOL / |
#4: Chemical | ChemComp-CL / |
#5: Chemical | ChemComp-CD / |
#6: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.07 Å3/Da / Density % sol: 40.64 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 5.1 / Details: pH 5.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 293 K / pH: 5.1 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→99 Å / Num. obs: 18988 / % possible obs: 100 % / Observed criterion σ(I): -3 / Redundancy: 6.58 % / Rmerge(I) obs: 0.022 |
Reflection shell | Resolution: 1.85→1.88 Å / Redundancy: 5.01 % / Rmerge(I) obs: 0.044 / % possible all: 100 |
Reflection shell | *PLUS Mean I/σ(I) obs: 40.1 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1LKB Resolution: 1.85→20 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 1.85→20 Å
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Refinement | *PLUS Rfactor Rfree: 0.2048 / Rfactor Rwork: 0.1649 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS |