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Yorodumi- PDB-1inc: CRYSTAL STRUCTURES OF THE COMPLEX OF PORCINE PANCREATIC ELASTASE ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1inc | ||||||
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Title | CRYSTAL STRUCTURES OF THE COMPLEX OF PORCINE PANCREATIC ELASTASE WITH TWO VALINE-DERIVED BENZOXAZINONE INHIBITORS | ||||||
Components | PORCINE PANCREATIC ELASTASE | ||||||
Keywords | HYDROLASE(SERINE PROTEINASE) | ||||||
Function / homology | Function and homology information pancreatic elastase / serine-type endopeptidase activity / proteolysis / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | Sus scrofa domestica (domestic pig) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.94 Å | ||||||
Authors | Meyer, E. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1987 Title: Crystal structures of the complex of porcine pancreatic elastase with two valine-derived benzoxazinone inhibitors. Authors: Radhakrishnan, R. / Presta, L.G. / Meyer Jr., E.F. / Wildonger, R. #1: Journal: J.Am.Chem.Soc. / Year: 1992 Title: Design, Synthesis, and Kinetic Evaluation of a Unique Class of Elastase Inhibitors, the Peptidyl Alpha-Ketobenzoxazoles, and the X-Ray Crystal Structure of the Covalent Complex between Porcine ...Title: Design, Synthesis, and Kinetic Evaluation of a Unique Class of Elastase Inhibitors, the Peptidyl Alpha-Ketobenzoxazoles, and the X-Ray Crystal Structure of the Covalent Complex between Porcine Pancreatic Elastase and Ac-Ala-Pro-Val-2-Benzoxazole Authors: Edwards, P.D. / Meyer Junior, E.F. / Vijayalakshmi, J. / Tuthill, P.A. / Andisik, D.A. / Gomes, B. / Strimpler, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1inc.cif.gz | 63.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1inc.ent.gz | 45.5 KB | Display | PDB format |
PDBx/mmJSON format | 1inc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1inc_validation.pdf.gz | 472.7 KB | Display | wwPDB validaton report |
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Full document | 1inc_full_validation.pdf.gz | 479.3 KB | Display | |
Data in XML | 1inc_validation.xml.gz | 7.6 KB | Display | |
Data in CIF | 1inc_validation.cif.gz | 11.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/in/1inc ftp://data.pdbj.org/pub/pdb/validation_reports/in/1inc | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 25928.031 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sus scrofa domestica (domestic pig) / Species: Sus scrofa / Strain: domestica / References: UniProt: P00772, pancreatic elastase |
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#2: Chemical | ChemComp-SO4 / |
#3: Chemical | ChemComp-CA / |
#4: Chemical | ChemComp-ICL / [ |
#5: Water | ChemComp-HOH / |
Sequence details | SEQUENCE ADVISORY NOTICE: DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: ...SEQUENCE ADVISORY NOTICE: DIFFERENCE |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.19 Å3/Da / Density % sol: 43.77 % | |||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 5 / Method: microdialysis | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.76 Å / Num. obs: 17309 / % possible obs: 44 % / Num. measured all: 48138 / Rmerge(I) obs: 0.068 |
Reflection shell | *PLUS Highest resolution: 1.76 Å / Lowest resolution: 1.79 Å / Num. possible: 29 |
-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Highest resolution: 1.94 Å /
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Refinement step | Cycle: LAST / Highest resolution: 1.94 Å
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Refine LS restraints |
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Software | *PLUS Name: EREF / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.76 Å / Lowest resolution: 7 Å / Num. reflection obs: 6320 / Rfactor obs: 0.172 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 16.7 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: o_angle_d / Dev ideal: 2.8 |