+Open data
-Basic information
Entry | Database: PDB / ID: 1elb | ||||||
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Title | Analogous inhibitors of elastase do not always bind analogously | ||||||
Components | ELASTASE | ||||||
Keywords | HYDROLASE/HYDROLASE INHIBITOR / HYDROLASE-HYDROLASE INHIBITOR COMPLEX / SERINE PROTEINASE | ||||||
Function / homology | Function and homology information pancreatic elastase / serine-type endopeptidase activity / proteolysis / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | Sus scrofa (pig) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.1 Å | ||||||
Authors | Mattos, C. / Rasmussen, B. / Ding, X. / Petsko, G.A. / Ringe, D. | ||||||
Citation | Journal: Nat.Struct.Biol. / Year: 1994 Title: Analogous inhibitors of elastase do not always bind analogously. Authors: Mattos, C. / Rasmussen, B. / Ding, X. / Petsko, G.A. / Ringe, D. #1: Journal: J.Mol.Recog. / Year: 1990 Title: Interaction of the Peptide Cf3-Leu-Ala-Nh-C6H4-Cf3 (Tfla) with Porcine Pancreatic Elastase. X-Ray Studies at 1.8 Angstroms Authors: Li De La Sierra, I. / Papamichael, E. / Sakarelos, C. / Dimicoli, J.-L. / Prange, T. #2: Journal: Acta Crystallogr.,Sect.B / Year: 1988 Title: Structure of Native Porcine Pancreatic Elastase at 1.65 Angstroms Resolution Authors: Meyer, E. / Cole, G. / Radhakrishnan, R. / Epp, O. #3: Journal: J.Mol.Biol. / Year: 1986 Title: Structure of the Product Complex of Acetyl-Ala-Pro-Ala with Porcine Pancreatic Elastase at 1.65 Angstroms Resolution Authors: Meyer, E. / Radhakrishnan, R. / Cole, G. / Presta, L.G. #4: Journal: J.Mol.Biol. / Year: 1982 Title: Crystallographic Study of the Binding of a Tri-Fluoroacetyl Dipeptide Anilide Inhibitor with Elastase Authors: Hughes, D.L. / Diecker, L.C. / Bieth, L.C. / Dimicoli, J.-L. #5: Journal: Eur.J.Biochem. / Year: 1980 Title: The Indirect Mechanism of Action of the Trifluoroacetyl Peptides on Elastase Authors: Dimicoli, J.-L. / Renaud, A. / Bieth, J. #6: Journal: J.Mol.Biol. / Year: 1978 Title: The Atomic Structure of Crystalline Porcine Pancreatic Elastase at 2.5 Angstroms Resolution. Comparisons with the Structure of Alpha-Chymotrypsin Authors: Sawyer, L. / Shotton, C.M. / Campbell, J.W. / Wendell, P.L. / Muirhead, H. / Watson, H.C. / Diamond, R. / Ladner, R.C. | ||||||
History |
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Remark 700 | SHEET THE SHEETS PRESENTED AS *S1* AND *S2* IN SHEET RECORDS BELOW ARE ACTUALLY TWO SIX-STRANDED ...SHEET THE SHEETS PRESENTED AS *S1* AND *S2* IN SHEET RECORDS BELOW ARE ACTUALLY TWO SIX-STRANDED BETA BARRELS. THIS IS REPRESENTED BY TWO SEVEN-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS OF EACH SHEET ARE IDENTICAL. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1elb.cif.gz | 59.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1elb.ent.gz | 46.8 KB | Display | PDB format |
PDBx/mmJSON format | 1elb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/el/1elb ftp://data.pdbj.org/pub/pdb/validation_reports/el/1elb | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 25928.031 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sus scrofa (pig) / Organ: PANCREAS / References: UniProt: P00772, pancreatic elastase |
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#2: Chemical | ChemComp-0Z4 / |
#3: Chemical | ChemComp-CA / |
#4: Chemical | ChemComp-SO4 / |
#5: Water | ChemComp-HOH / |
Sequence details | THE IDENTITY OF ASN A 81 AGREES WITH THE SEQUENCES OF SEVERAL OTHER ELASTASE STRUCTURES. THE ...THE IDENTITY OF ASN A 81 AGREES WITH THE SEQUENCES OF SEVERAL OTHER ELASTASE STRUCTURES |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.1 Å3/Da / Density % sol: 41.32 % | |||||||||||||||
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Crystal grow | Details: THE COMPLEX WAS DONE BY SOAKING OF THE INHIBITOR. THE NATIVE ELASTASE CRYSTALS WERE TRANSFERRED FROM THE SITTING DROP TO A HIGH-SALT MOTHER LIQUOR CONTAINING THE TFA-LYS-PRO-ISO INHIBITOR AT ...Details: THE COMPLEX WAS DONE BY SOAKING OF THE INHIBITOR. THE NATIVE ELASTASE CRYSTALS WERE TRANSFERRED FROM THE SITTING DROP TO A HIGH-SALT MOTHER LIQUOR CONTAINING THE TFA-LYS-PRO-ISO INHIBITOR AT A CONCENTRATION OF 0.1 MILLIMOLAR. THE INHIBITOR WAS SOAKED FOR FOUR DAYS. | |||||||||||||||
Crystal grow | *PLUS pH: 5 / Method: vapor diffusion | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.06 Å |
-Processing
Software |
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Refinement | Resolution: 2.1→10 Å / Rfactor Rwork: 0.15 / Rfactor obs: 0.15 / σ(F): 0 | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→10 Å
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Refinement | *PLUS Rfactor all: 0.15 / Rfactor Rwork: 0.15 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |