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Yorodumi- PDB-1nes: STRUCTURE OF THE PRODUCT COMPLEX OF ACETYL-ALA-PRO-ALA WITH PORCI... -
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-Basic information
Entry | Database: PDB / ID: 1nes | ||||||
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Title | STRUCTURE OF THE PRODUCT COMPLEX OF ACETYL-ALA-PRO-ALA WITH PORCINE PANCREATIC ELASTASE AT 1.65 ANGSTROMS RESOLUTION | ||||||
Components |
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Keywords | HYDROLASE/HYDROLASE INHIBITOR / SERINE PROTEASE/INHIBITOR / HYDROLASE-HYDROLASE INHIBITOR complex | ||||||
Function / homology | Function and homology information pancreatic elastase / serine-type endopeptidase activity / proteolysis / extracellular space / metal ion binding Similarity search - Function | ||||||
Biological species | Sus scrofa (pig) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.65 Å | ||||||
Authors | Meyer Junior, E.F. / Radhakrishnan, R. / M Cole, G. / Presta, L.G. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1986 Title: Structure of the product complex of acetyl-Ala-Pro-Ala with porcine pancreatic elastase at 1.65 A resolution. Authors: Meyer Jr., E.F. / Radhakrishnan, R. / Cole, G.M. / Presta, L.G. #1: Journal: To be Published Title: Misbehaving Macromolecules: Backwards Binding Ligands and Other Surprising Structures Authors: Meyer, E.F. / Botos, I. / Scapozza, L. / Zhang, D. #2: Journal: J.Med.Chem. / Year: 1992 Title: Effect of the 7-Amino Substituent on the Inhibitory Potency of Mechanism-Based Isocoumarin Inhibitors for Porcine Pancreatic and Human Neutrophil Elastases: A 1.85-Angstroms X-Ray Structure of ...Title: Effect of the 7-Amino Substituent on the Inhibitory Potency of Mechanism-Based Isocoumarin Inhibitors for Porcine Pancreatic and Human Neutrophil Elastases: A 1.85-Angstroms X-Ray Structure of the Complex between Porcine Pancreatic Elastase and 7-[(N-Tosylphenylalanyl)Amino]-4-Chloro-3-Methoxyisocoumarin Authors: Hernandez, M.A. / Powers, J.C. / Glinski, J. / Oleksyszyn, J. / Vijayalakshmi, J. / Meyer Junior, E.F. #3: Journal: Biochemistry / Year: 1991 Title: Complexed with 7-Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin as a Nonreactivatable Doubly Covalent Enzyme-Inhibitor Complex Authors: Vijayalakshmi, J. / Meyer Junior, E.F. / Kam, C.-M. / Powers, J.C. #4: Journal: Biochemistry / Year: 1990 Title: Reaction of Porcine Pancreatic Elastase with 7-Substituted 3-Alkoxy-4-Chloroisocoumarins: Design of Potent Inhibitors Using the Crystal Structure of the Complex Formed with 4-Chloro-3-Ethoxy-7- ...Title: Reaction of Porcine Pancreatic Elastase with 7-Substituted 3-Alkoxy-4-Chloroisocoumarins: Design of Potent Inhibitors Using the Crystal Structure of the Complex Formed with 4-Chloro-3-Ethoxy-7-Guanidino-Isocoumarin Authors: Powers, J.C. / Oleksyszyn, J. / Narasimhan, S.L. / Kam, C.-M. / Radhakrishnan, R. / Meyer Junior, E.F. #5: Journal: J.Am.Chem.Soc. / Year: 1990 Title: The 2.2-Angstrom Resolution X-Ray Crystal Structure of the Complex of Trypsin Inhibited by 4-Chloro-3-Ethoxy-7-Guanidinoisocoumarin: A Proposed Model of the Thrombin-Inhibitor Complex Authors: Chow, M.M. / Meyer Junior, E.F. / Bode, W. / Kam, C.-M. / Radhakrishnan, R. / Vijayalakshmi, J. / Powers, J.C. #6: Journal: Biochemistry / Year: 1989 Title: Human Leukocyte and Porcine Pancreatic Elastase: X-Ray Crystal Structures, Mechanism, Substrate Specificity, and Mechanism-Based Inhibitors Authors: Bode, W. / Meyer Junior, E.F. / Powers, J.C. #7: Journal: Acta Crystallogr.,Sect.B / Year: 1988 Title: Structure of Native Porcine Pancreatic Elastase at 1.65 Angstroms Resolution Authors: Meyer, E. / Cole, G. / Radhakrishnan, R. / Epp, O. #8: Journal: J.Mol.Biol. / Year: 1987 Title: Crystal Structures of the Complex of Porcine Pancreatic Elastase with Two Valine-Derived Benzoxazinone Inhibitors Authors: Radhakrishnan, R. / Presta, L.G. / Meyer Junior, E.F. / Wildonger, R. #9: Journal: J.Mol.Biol. / Year: 1987 Title: Crystal Structures of the Complex of Porcine Pancreatic Elastase with Two Valine-Derived Benzoxazinone Inhibitors Authors: Radhakrishnan, R. / Presta, L.G. / Meyer Junior, E.F. / Wildonger, R. #10: Journal: J.Am.Chem.Soc. / Year: 1985 Title: Stereospecific Reaction of 3-Methoxy-4-Chloro-7-Amino-Isocoumarin with Crystalline Porcine Pancreatic Elastase Authors: Meyer Junior, E.F. / Presta, L.G. / Radhakrishnan, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1nes.cif.gz | 56.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1nes.ent.gz | 44.9 KB | Display | PDB format |
PDBx/mmJSON format | 1nes.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ne/1nes ftp://data.pdbj.org/pub/pdb/validation_reports/ne/1nes | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 25928.031 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Sus scrofa (pig) / Organ: PANCREAS / References: UniProt: P00772, pancreatic elastase | ||||||
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#2: Protein/peptide | Mass: 283.323 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source #3: Chemical | ChemComp-CA / | #4: Chemical | ChemComp-SO4 / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.13 Å3/Da / Density % sol: 42.19 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 5 / Method: microdialysis | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Observed criterion σ(F): 2 |
Reflection | *PLUS Highest resolution: 1.65 Å / Num. obs: 20665 / % possible obs: 72 % |
-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||
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Refinement | Resolution: 1.65→7 Å / σ(F): 1
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Refinement step | Cycle: LAST / Resolution: 1.65→7 Å
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Refine LS restraints | *PLUS
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