[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 473 items for (author: ryo & a)

EMDB-67107:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

PDB-9xqb:
Cryo-EM structure of the human A2A adenosine receptor in complex with a Fab antibody fragment
Method: single particle / : Miyashita Y, Konno R, Ogasawara S, Okuda Y, Takamuku Y, Moriya T, Saito T, Murata T, Ohara O, Kawashima Y

EMDB-64921:
Cryo-EM structure of human PLD3 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64922:
Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64923:
Cryo-EM structure of PLD3 bound to ssDNA (poly(A))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64924:
Cryo-EM structure of human PLD4 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-64925:
Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbg:
Cryo-EM structure of human PLD3 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbh:
Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbi:
Cryo-EM structure of PLD3 bound to ssDNA (poly(A))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbj:
Cryo-EM structure of human PLD4 apo form
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

PDB-9vbk:
Cryo-EM structure of human PLD4 bound to ssDNA (poly(T))
Method: single particle / : Hirano Y, Ezaki W, Ohto U, Shimizu T

EMDB-62427:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

PDB-9kmc:
Cryo-EM structure of the heterotrimeric interleukin-2 receptor in complex with interleukin-2 and anti-CD25 Fab S417
Method: single particle / : Katsura K, Matsumoto T, Shirouzu M

EMDB-64947:
Cryo-EM structure of the human kappa opioid receptor signaling complex bound to compound A
Method: single particle / : Suno-Ikeda C, Sugita Y, Hirose M, Suno R

EMDB-65622:
Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

PDB-9v6o:
Cryo-EM structure of human kappa opioid receptor - G protein signaling complex bound with nalfurafine.
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

PDB-9w49:
Cryo-EM structure of human kappa opioid receptor -G protein signaling complex bound with U-50488H
Method: single particle / : Suno-Ikeda C, Takai T, Hirose M, Inoue A, Sugita Y, Kato T, Kobayashi T, Suno R

EMDB-64381:
Cryo-EM structure of pyrene-modified TIP60 double mutant (G12C/S50C) with addition of Nile Red
Method: single particle / : Yamashita M, Kawakami N, Arai R, Ikeda A, Moriya T, Senda T, Miyamoto K

PDB-9uol:
Cryo-EM structure of pyrene-modified TIP60 double mutant (G12C/S50C) with addition of Nile Red
Method: single particle / : Yamashita M, Kawakami N, Arai R, Ikeda A, Moriya T, Senda T, Miyamoto K

EMDB-63950:
Cryo-EM structure of Leminorella grimontii GatC in the presence of D-xylose
Method: single particle / : Takahashi YS, Kohga H, Shigematsu H, Miyazaki R, Tsukazaki T

EMDB-63951:
Cryo-EM structure of Leminorella grimontii GatC in the absence of D-xylose
Method: single particle / : Takahashi YS, Kohaga H, Shigematsu H, Miyazaki R, Tsukazaki T

PDB-9u82:
Cryo-EM structure of Leminorella grimontii GatC in the presence of D-xylose
Method: single particle / : Takahashi YS, Kohga H, Shigematsu H, Miyazaki R, Tsukazaki T

PDB-9u84:
Cryo-EM structure of Leminorella grimontii GatC in the absence of D-xylose
Method: single particle / : Takahashi YS, Kohaga H, Shigematsu H, Miyazaki R, Tsukazaki T

EMDB-39666:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

PDB-8yy4:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

EMDB-65026:
PSI-LHCI of Euglena gracilis strain Z
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

PDB-9vfj:
PSI-LHCI of Euglena gracilis strain Z
Method: single particle / : Kato K, Nakajima Y, Shen JR, Nagao R

EMDB-39664:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39665:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39667:
Kinesin-14 with AlF3 bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39668:
Kinesin-14 with AMPPNP bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39669:
Kinesin-14 with AMPPNP bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy2:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy3:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

PDB-8yy5:
Kinesin-14 with AlF3 bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-64256:
JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)
Method: single particle / : Kohga H, Lertpreedakorn N, Tsukazaki T

PDB-9ukv:
JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)
Method: single particle / : Kohga H, Lertpreedakorn N, Tsukazaki T

EMDB-62232:
CryoEM structure of microtubule bound with GAS2-GAR domain.
Method: helical / : An J, Imasaki T, Narita A, Niwa S, Sasaki R, Makino T, Nitta R, Kikkawa M

EMDB-62233:
CryoEM structure of F-actin bound with GAS2-CH3 domain.
Method: helical / : An J, Imasaki T, Narita A, Niwa S, Sasaki R, Makino T, Nitta R, Kikkawa M

PDB-9kbw:
CryoEM structure of microtubule bound with GAS2-GAR domain.
Method: helical / : An J, Imasaki T, Narita A, Niwa S, Sasaki R, Makino T, Nitta R, Kikkawa M

PDB-9kbx:
CryoEM structure of F-actin bound with GAS2-CH3 domain.
Method: helical / : An J, Imasaki T, Narita A, Niwa S, Sasaki R, Makino T, Nitta R, Kikkawa M

EMDB-63050:
Cryo-EM structure of linker-extended biparatopic antibody BA1-GP4 in complex with TNFR2
Method: single particle / : Otsuki T, Matsumoto S, Fujita J, Miyata T, Namba K, Kanada R, Okuno Y, Kamada H, Ohno H, Akiba H

PDB-9lfl:
Cryo-EM structure of linker-extended biparatopic antibody BA1-GP4 in complex with TNFR2
Method: single particle / : Otsuki T, Matsumoto S, Fujita J, Miyata T, Namba K, Kanada R, Okuno Y, Kamada H, Ohno H, Akiba H

EMDB-62452:
Cryo-EM structure of LptDEM complex from Escherichia coli
Method: single particle / : Tsukazaki T, Kohga H, Miyazaki R

PDB-9kn3:
Cryo-EM structure of LptDEM complex from Escherichia coli
Method: single particle / : Tsukazaki T, Kohga H, Miyazaki R

EMDB-60837:
Cryo-EM structure of KpFtsZ-ZapA complex
Method: helical / : Fujita J, Hibino K, Kagoshima G, Kamimura N, Kato Y, Uehara R, Namba K, Uchihashi T, Matsumura H

PDB-9isk:
Cryo-EM structure of KpFtsZ-ZapA complex
Method: helical / : Fujita J, Hibino K, Kagoshima G, Kamimura N, Kato Y, Uehara R, Namba K, Uchihashi T, Matsumura H

EMDB-63714:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-64946:
Map including micelle density from the photosynthetic LH1-RC complex of the halophilic nonsulfur purple bacterium Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Inada K, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more