[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,257 items for (author: nath & ak)

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-49972:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70206:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-70232:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70239:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70259:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o0g:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Berger JM

PDB-9o7o:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o8p:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Berger JM

PDB-9o8z:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Berger JM

PDB-9o9m:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-71415:
Yeast Respiratory SuperComplex - deltaQCR6
Method: single particle / : Baker ML

EMDB-71416:
Yeast Respiratory SuperComplex - non uniform refinement
Method: single particle / : Baker ML

EMDB-55171:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)
Method: single particle / : Hassan AH, Demo G

EMDB-55173:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)
Method: single particle / : Hassan AH, Demo G

EMDB-55174:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)
Method: single particle / : Hassan AH, Demo G

EMDB-55176:
pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55177:
50S ribosomal subunit in rimM-KO with RsfS (+H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55178:
70S ribosome from RimM-KO
Method: single particle / : Hassan AH, Demo G

EMDB-55181:
30S ribosomal subunit RimM-WT with IF1 and IF3
Method: single particle / : Hassan AH, Demo G

EMDB-55182:
pre-50S ribosomal subunit from RimM-WT with RsfS (-H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55183:
50S ribosomal subunit from RimM-WT with RsfS (+H68)
Method: single particle / : Hassan AH, Demo G

EMDB-55185:
70S ribosome from RimM-WT
Method: single particle / : Hassan AH, Demo G

PDB-9ss0:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)
Method: single particle / : Hassan AH, Demo G

PDB-9ss1:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)
Method: single particle / : Hassan AH, Demo G

PDB-9ss2:
30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)
Method: single particle / : Hassan AH, Demo G

PDB-9ss4:
pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
Method: single particle / : Hassan AH, Demo G

PDB-9ss5:
50S ribosomal subunit in rimM-KO with RsfS (+H68)
Method: single particle / : Hassan AH, Demo G

PDB-9ss6:
70S ribosome from RimM-KO
Method: single particle / : Hassan AH, Demo G

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-55722:
Tilvestamab Fab bound to the anti-Fab nanobody
Method: single particle / : Lopez AJ, Christakou E, Kursula P

PDB-9t9m:
Tilvestamab Fab bound to the anti-Fab nanobody
Method: single particle / : Lopez AJ, Christakou E, Kursula P

EMDB-54112:
CryoEM structure of the microtubule-AKAP13 C1 domain complex
Method: single particle / : Giono M, Choi SR, Filipcik P, Steinmetz MO

EMDB-52587:
Csu pilus rod purified from Acinetobacter baumannii
Method: helical / : Malmi H, Zavialov AV, Pakharukova N

EMDB-52600:
Csu pilus rod antiparallel pair
Method: single particle / : Malmi H, Pakharukova N, Zavialov AV

EMDB-52601:
Csu pilus rod type 1 stack
Method: single particle / : Malmi H, Pakharukova N, Zavialov AV

EMDB-52602:
Csu pilus rod type 2 stack
Method: single particle / : Malmi H, Pakharukova N, Zavialov AV

PDB-9i37:
Csu pilus rod purified from Acinetobacter baumannii
Method: helical / : Malmi H, Zavialov AV, Pakharukova N

PDB-9i3m:
Csu pilus rod antiparallel pair
Method: single particle / : Malmi H, Pakharukova N, Zavialov AV

PDB-9i3n:
Csu pilus rod type 1 stack
Method: single particle / : Malmi H, Pakharukova N, Zavialov AV

PDB-9i3o:
Csu pilus rod type 2 stack
Method: single particle / : Malmi H, Pakharukova N, Zavialov AV

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-53716:
Hexahistidine-tagged tobacco mosaic virus coat protein 3-layer disk
Method: single particle / : Biela AP, Abu-Baker I

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more