[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 363 items for (author: nami & t)

EMDB-60995:
P ring on polyrod-P ring complex from Salmonella TH26292 strain
Method: single particle / : Yamaguchi T, Kato T, Minamino T, Namba K

PDB-9iyc:
P ring on polyrod-P ring complex from Salmonella TH26292 strain
Method: single particle / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-48757:
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 3
Method: single particle / : Chang PZ, Nami T

PDB-9mzi:
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 3
Method: single particle / : Chang PZ, Nami T

EMDB-48758:
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 2
Method: single particle / : Chang PZ, Nami T

PDB-9mzj:
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 2
Method: single particle / : Chang PZ, Nami T

EMDB-61731:
Polyrod formed by FlgG (G65V) from the Salmonella TH26292 strain
Method: helical / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-61835:
Polyrod-P ring complex from Salmonella TH26292 strain
Method: single particle / : Yamaguchi T, Namba K, Minamino T, Kato T

PDB-9jqo:
Polyrod formed by FlgG (G65V) from the Salmonella TH26292 strain
Method: helical / : Yamaguchi T, Kato T, Minamino T, Namba K

EMDB-48760:
CryoEM structure of GluK2 bound to glutamate in the transition state
Method: single particle / : Chang PZ, Nami T

PDB-9mzl:
CryoEM structure of GluK2 bound to glutamate in the transition state
Method: single particle / : Chang PZ, Nami T

EMDB-48764:
CryoEM structure of GluK2 bound to glutamate in the shallow desensitized state, composite map
Method: single particle / : Chang PZ, Nami T

PDB-9mzp:
CryoEM structure of GluK2 bound to glutamate in the shallow desensitized state, composite map
Method: single particle / : Chang PZ, Nami T

EMDB-48759:
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 1
Method: single particle / : Chang PZ, Nami T

PDB-9mzk:
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 1
Method: single particle / : Chang PZ, Nami T

EMDB-48761:
CryoEM structure of GluK2 bound to glutamate in the shallow desensitized state, consensus map
Method: single particle / : Chang PZ, Nami T

PDB-9mzm:
CryoEM structure of GluK2 bound to glutamate in the shallow desensitized state, consensus map
Method: single particle / : Chang PZ, Nami T

EMDB-53068:
Cryo-EM map of P. furiosus 70S grown at 95 degrees
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53069:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53070:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53071:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53072:
Consensus cryo-EM map of P furiosus 70S grown at 102degC
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53073:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53074:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53076:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53077:
Consensus cryo-EM map of P. furiosus 70S in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53078:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53079:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53080:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oog:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oom:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9ook:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-53098:
Structure of P. furiosus 70S ribosome grown at 95 degC
Method: single particle / : Matzov D, Georgeson G, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53099:
Structure of P. furiosus 70S ribosome grown at 102deg
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53100:
Structure of P. furiosus 70S ribosome in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf4:
Structure of P. furiosus 70S ribosome grown at 95 degC
Method: single particle / : Matzov D, Georgeson G, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf5:
Structure of P. furiosus 70S ribosome grown at 102deg
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf6:
Structure of P. furiosus 70S ribosome in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53335:
apPol-DNA-nucleotide complex consensus refinement
Method: single particle / : Lahiri I, Kumari A

EMDB-53374:
apPol-DNA-nucleotide complex (ternary2)
Method: single particle / : Lahiri I, Kumari A

EMDB-53376:
apPol-DNA-nucleotide complex (ternary 1)
Method: single particle / : Lahiri I, Kumari A

EMDB-53378:
apPol-DNA complex (binary 1)
Method: single particle / : Lahiri I, Kumari A

EMDB-53379:
apPol-nucleotide complex
Method: single particle / : Lahiri I, Kumari A

EMDB-53391:
apPol-DNA-nucleotide complex (ternary 3)
Method: single particle / : Lahiri I, Kumari A

PDB-9qsc:
apPol-DNA-nucleotide complex consensus refinement
Method: single particle / : Lahiri I, Kumari A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more