[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 365 items for (author: lum & a)

EMDB-42603:
Human p97/VCP structure with a triazole inhibitor (NSC799462/hexamer)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42625:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC804515)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42626:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/up)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-42627:
Human p97/VCP R155H mutant structure with a triazole inhibitor (NSC819701/down)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-44748:
Human p97/VCP structure with a triazole inhibitor (NSC799462/dodecamer)
Method: single particle / : Nandi P, DeVore K, Chiu PL

EMDB-36083:
Cryo-EM structure of DDM1-nucleosome complex
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-36084:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-36085:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j90:
Cryo-EM structure of DDM1-nucleosome complex
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j91:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j92:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-18540:
human connexin-36 gap junction channel in complex with mefloquine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

EMDB-18987:
human connexin-36 gap junction channel
Method: single particle / : Ding XY, Blum TB, Korkhov VM

EMDB-18988:
human connexin-36 gap junction channel in complex with quinine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

PDB-8qoj:
human connexin-36 gap junction channel in complex with mefloquine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

PDB-8r7p:
human connexin-36 gap junction channel
Method: single particle / : Ding XY, Blum TB, Korkhov VM

PDB-8r7q:
human connexin-36 gap junction channel in complex with quinine
Method: single particle / : Ding XY, Blum TB, Korkhov VM

EMDB-19163:
Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

EMDB-19164:
Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

EMDB-19165:
Trimeric HSV-2F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

EMDB-19166:
Trimeric HSV-2G gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

PDB-8rgz:
Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

PDB-8rh0:
Trimeric HSV-1F gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

PDB-8rh1:
Trimeric HSV-2F gB ectodomain in postfusion conformation with three bound HDIT101 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

PDB-8rh2:
Trimeric HSV-2G gB ectodomain in postfusion conformation with three bound HDIT102 Fab molecules.
Method: single particle / : Kalbermatter D, Seyfizadeh N, Imhof T, Ries M, Mueller C, Jenner L, Blumenschein E, Yendrzheyevskiy A, Moog K, Eckert D, Engel R, Diebolder P, Chami M, Krauss J, Schaller T, Arndt M

EMDB-16103:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16104:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16105:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8bl8:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8bla:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8blb:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-41639:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41640:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-41641:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41642:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41644:
Langya henipavirus postfusion fusion protein in complex with 4G5 Fab (global refinement)
Method: single particle / : Wang Z, Veesler D

PDB-8tve:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvf:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8tvg:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvh:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41636:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41643:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43593:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation
Method: single particle / : Gibson CG, McCallum MM, Veesler DV

PDB-8tvb:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8tvi:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vwp:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation
Method: single particle / : Gibson CG, McCallum MM, Veesler DV, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more