[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 499 items for (author: lum & a)

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-56129:
Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Method: single particle / : Amann SJ, de Araujo MEG, Grishkovskaya I, Huber LA, Haselbach D

EMDB-54112:
CryoEM structure of the microtubule-AKAP13 C1 domain complex
Method: single particle / : Giono M, Choi SR, Filipcik P, Steinmetz MO

EMDB-53716:
Hexahistidine-tagged tobacco mosaic virus coat protein 3-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53717:
Hexahistidine-tagged tobacco mosaic virus coat protein 4-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53718:
Hexahistidine-tagged tobacco mosaic virus coat protein 5-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53720:
Hexahistidine-tagged tobacco mosaic virus coat protein 6-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-52330:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 1
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

EMDB-52331:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 2
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

PDB-9hpi:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 1
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

PDB-9hpj:
Cryo-EM structure of DDB1dB-CRBN-MRT-0031619, conformation 2
Method: single particle / : Langousis G, Hunkeler M, Chami M, Quan C, Townson S, Bonenfant D

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9njl:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-61242:
Cryo-EM structure of native NCP-UV-DDB complex
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61243:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61246:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-2
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61247:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-3
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-61248:
Cryo-EM structure of UV-DDB bound to native NCP at SHL+/-6
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

PDB-9j8w:
Cryo-EM structure of NCP-UV-DDB complex containing CPD
Method: single particle / : Matsumoto S, Takizawa Y, Ogasawara M, Hashimoto K, Negishi L, Xu W, Tachibana H, Yamamoto J, Iwai S, Sugasawa K, Kurumizaka H

EMDB-51768:
Cryo-EM structure of taxol-microtubules in complex with the C1 domain of GEFH1
Method: single particle / : Choi SR, Blum T, Steinmetz MO

PDB-9h1o:
Cryo-EM structure of taxol-microtubules in complex with the C1 domain of GEFH1
Method: single particle / : Choi SR, Blum T, Steinmetz MO

EMDB-64508:
A tomogram of basal body in the male gamete of plasmodium
Method: electron tomography / : Li Z, Ma S, Guo Q

EMDB-64509:
A tomogram of basal body in the male gamete of plasmodium
Method: electron tomography / : Li Z, Ma S, Guo Q

EMDB-64510:
A tomogram of basal body in the male gamete of plasmodium
Method: electron tomography / : Li Z, Ma S, Guo Q

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-72464:
Reconstruction of Candida albicans fatty acid synthase from cell slices using 2DTM
Method: single particle / : Elferich J, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72486:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (60S Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72488:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (mRNA decoding Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72489:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (Peptidyl transfer Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-72490:
Reconstruction of Candida albicans ribosomes from cell slices using 2DTM (tRNA translocation Class)
Method: single particle / : Elferich J, Diggs S, Plumb E, Arkowitz RA, Grigorieff N

EMDB-53721:
Asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53722:
Cytoplasmic ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53723:
Inner ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53724:
Nuclear ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53725:
Asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53727:
Top nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53728:
Inner ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53729:
Bottom nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53731:
Nuclear pore complex in the nuclear envelope (NE-NPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53732:
Nuclear pore complex in nucleoplasmic membranes (nNPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53739:
Asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53740:
Cytoplasmic ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53741:
Inner ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53742:
Nuclear ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53743:
Nuclear basket asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53744:
Asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53745:
Top cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53746:
Inner ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more