[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 357 items for (author: kater & l)

EMDB-50913:
Structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50914:
Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50915:
Consensus refinement of the complex between human RNF213 and the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Nadenova K, Randow F

EMDB-50916:
Local refinement of the RNF213 CBM domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50917:
Local refinement of the RNF213 stalk domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50918:
Local refinement of the RNF213 ATPase domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50919:
Local refinement of the RNF213 C-terminal and hinge domains in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50920:
Local refinement of the RNF213 E3 module in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50921:
Local refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50922:
Consensus refinement of the complex between human RNF213 and the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50923:
Local refinement of the RNF213 CBM domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50924:
Local refinement of the RNF213 stalk domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50925:
Local refinement of the RNF213 ATPase domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50926:
Local refinement of the RNF213 C-terminal and hinge domains in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50928:
Local refinement of the RNF213 E3 module in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-50929:
Local refinement of the RNF213 RING domain and the IpaH2.5 LRR domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

PDB-9g08:
Structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

PDB-9g09:
Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: single particle / : Naydenova K, Randow F

EMDB-51116:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

EMDB-51121:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

PDB-9g79:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

PDB-9g7f:
Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer
Method: single particle / : Zheng LJ, Du Y, Bange G

EMDB-63513:
Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

EMDB-63514:
Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

PDB-9lyo:
Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

PDB-9lyp:
Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

EMDB-44860:
Kinetochore on isolated human mitotic chromosome
Method: electron tomography / : Kixmoeller K, Chang YW, Black BE

EMDB-44862:
Kinetochore on isolated human mitotic chromosome after degradation of CENP-C
Method: electron tomography / : Kixmoeller K, Chang YW, Black BE

EMDB-44863:
Kinetochore on isolated human mitotic chromosome after degradation of CENP-N
Method: electron tomography / : Kixmoeller K, Chang YW, Black BE

EMDB-44864:
Kinetochore on isolated human mitotic chromosome under conditions of prolonged spindle detachment
Method: electron tomography / : Kixmoeller K, Chang YW, Black BE

EMDB-51963:
Cryo-EM structure of the human GABAA receptor alpha1 subunit in complex with the assembly factor NACHO/TMEM35A
Method: single particle / : Hooda Y, Sente A, Judy RM, Smalinskaite L, Peak-Chew S, Naydenova K, Malinauskas T, Hardwick SW, Chirgadze DY, Aricescu AR, Hegde RS

PDB-9h9e:
Cryo-EM structure of the human GABAA receptor alpha1 subunit in complex with the assembly factor NACHO/TMEM35A
Method: single particle / : Hooda Y, Sente A, Judy RM, Smalinskaite L, Peak-Chew S, Naydenova K, Malinauskas T, Hardwick SW, Chirgadze DY, Aricescu AR, Hegde RS

EMDB-19653:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-19654:
Human RNF213 (consensus refinement without accounting for flexibility)
Method: single particle / : Naydenova K, Randow F

EMDB-19655:
Human RNF213: focused refinement of ATPase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19656:
Human RNF213: focused refinement of stalk domain
Method: single particle / : Naydenova K, Randow F

EMDB-19657:
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Method: single particle / : Naydenova K, Randow F

EMDB-19658:
Human RNF213: focused refinement of E3 ligase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19659:
Human RNF213: focused refinement of E3-RING domain
Method: single particle / : Naydenova K, Randow F

PDB-8s24:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-18591:
Human Tip60 complex locally refined on RUVBL1/2
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18597:
Human Tip60 complex locally refined on ACTIN and the ATPase domain of EP400
Method: single particle / : Li C, Smirnova E, Schintzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18598:
Tip60 complex locally refined on ARP domain
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18611:
Cryo-EM structure of the human Tip60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18612:
Structure of TRRAP and EP400 in the human Tip 60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18613:
TRRAP in human Tip60 complex locally refined 1
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18618:
TRRAP in human Tip60 complex locally refined 2
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18619:
TRRAP and EP400 in the human Tip60 complex - composite map
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, SChultz P, Papai G, Ben-Shem A

EMDB-18794:
Human Tip60 complex with bound H2A.Z/H2B
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more