[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 325 items for (author: kater & l)

EMDB-19653:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-19654:
Human RNF213 (consensus refinement without accounting for flexibility)
Method: single particle / : Naydenova K, Randow F

EMDB-19655:
Human RNF213: focused refinement of ATPase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19656:
Human RNF213: focused refinement of stalk domain
Method: single particle / : Naydenova K, Randow F

EMDB-19657:
Human RNF213: focused refinement of carbohydrate binding module (CBM) domain
Method: single particle / : Naydenova K, Randow F

EMDB-19658:
Human RNF213: focused refinement of E3 ligase domain
Method: single particle / : Naydenova K, Randow F

EMDB-19659:
Human RNF213: focused refinement of E3-RING domain
Method: single particle / : Naydenova K, Randow F

PDB-8s24:
Structure of the E3 ubiquitin ligase RNF213, determined by cryoEM
Method: single particle / : Naydenova K, Randow F

EMDB-18581:
Human Tip60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18591:
Human Tip60 complex locally refined on RUVBL1/2
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18597:
Human Tip60 complex locally refined on ACTIN and the ATPase domain of EP400
Method: single particle / : Li C, Smirnova E, Schintzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18598:
Tip60 complex locally refined on ARP domain
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18611:
Cryo-EM structure of the human Tip60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18612:
Structure of TRRAP and EP400 in the human Tip 60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18613:
TRRAP in human Tip60 complex locally refined 1
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18618:
TRRAP in human Tip60 complex locally refined 2
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

EMDB-18619:
TRRAP and EP400 in the human Tip60 complex - composite map
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, SChultz P, Papai G, Ben-Shem A

EMDB-18794:
Human Tip60 complex with bound H2A.Z/H2B
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

PDB-8qr1:
Cryo-EM structure of the human Tip60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, Schultz P, Papai G, Ben-Shem A

PDB-8qri:
TRRAP and EP400 in the human Tip60 complex
Method: single particle / : Li C, Smirnova E, Schnitzler C, Crucifix C, Concordet JP, Brion A, Poterszman A, SChultz P, Papai G, Ben-Shem A

EMDB-19767:
Structure of a 2873 Scaffold Base DNA Origami V1
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19769:
Structure of a 2873 Scaffold Base DNA Origami V2
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19770:
Structure of a 2873 Scaffold Base DNA Origami V3
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19775:
Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 with Desalted Purified Staples
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19776:
Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 with HPLC Purified Staples
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19867:
Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19874:
Refinement Focused on the 1st Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19875:
Refinement Focused on the 2nd Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19876:
Refinement Focused on the 3rd Body of a 1033 Scaffold-Based DNA Origami Nanostructure V4 with TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

PDB-9eoq:
Cryo-EM Structure of a 1033 Scaffold Base DNA Origami Nanostructure V4 and TBA
Method: single particle / : Ali K, Georg K, Volodymyr M, Johanna G, Maximilian NH, Lukas K, Simone C, Hendrik D

EMDB-19477:
Saccharomyces cerevisiae FAS type I
Method: single particle / : Mann D, Grininger M, Ludig D, Sachse C

EMDB-19489:
Tobacco mosaic virus from scanning transmission electron microscopy at CSA=2.0 mrad
Method: helical / : Mann D, Filopoulou A, Sachse C

EMDB-19132:
Structure of dynein-2 intermediate chain DYNC2I2 (WDR34) in complex with dynein-2 heavy chain DYNC2H1.
Method: single particle / : Mukhopadhyay AG, Toropova K, Daly L, Wells J, Vuolo L, Mladenov M, Seda M, Jenkins D, Stephens DJ, Roberts AJ

EMDB-19133:
Structure of dynein-2 intermediate chain DYNC2I1 (WDR60) in complex with the dynein-2 heavy chain DYNC2H1.
Method: single particle / : Mukhopadhyay AG, Toropova K, Daly L, Wells J, Vuolo L, Seda M, Jenkins D, Stephens DJ, Roberts AJ

PDB-8rgg:
Structure of dynein-2 intermediate chain DYNC2I2 (WDR34) in complex with dynein-2 heavy chain DYNC2H1.
Method: single particle / : Mukhopadhyay AG, Toropova K, Daly L, Wells J, Vuolo L, Mladenov M, Seda M, Jenkins D, Stephens DJ, Roberts AJ

PDB-8rgh:
Structure of dynein-2 intermediate chain DYNC2I1 (WDR60) in complex with the dynein-2 heavy chain DYNC2H1.
Method: single particle / : Mukhopadhyay AG, Toropova K, Daly L, Wells J, Vuolo L, Seda M, Jenkins D, Stephens DJ, Roberts AJ

EMDB-18497:
Human Sirtuin 6 in complex with nucleosome - structure showing H2A tail path
Method: single particle / : Smirnova E, Bignon E, Schultz P, Papai G, Ben-Shem A

EMDB-40223:
Cryo-ET reconstruction of WT HSV-1 NEC coat
Method: subtomogram averaging / : Wang H, Draganova EB

EMDB-40224:
Cryo-ET reconstruction of HSV-1 DN/SUP mutant NEC coat
Method: subtomogram averaging / : Wang H, Draganova EB

EMDB-40225:
Cryo-ET reconstruction of HSV-1 SUP mutant NEC coat
Method: subtomogram averaging / : Wang H, Draganova EB

EMDB-16552:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16553:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement 80S
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16554:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement RQT
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-18809:
Monomeric E6AP-E6-p53 ternary complex
Method: single particle / : Sandate CR, Chakraborty D, Kater L, Kempf G, Thoma NH

EMDB-18810:
Dimeric ternary structure of E6AP-E6-p53
Method: single particle / : Sandate CR, Chakrabory D, Kater L, Kempf G, Thoma NH

PDB-8r1f:
Monomeric E6AP-E6-p53 ternary complex
Method: single particle / : Sandate CR, Chakraborty D, Kater L, Kempf G, Thoma NH

PDB-8r1g:
Dimeric ternary structure of E6AP-E6-p53
Method: single particle / : Sandate CR, Chakrabory D, Kater L, Kempf G, Thoma NH

EMDB-17958:
Structure of DPS determined by cryoEM at 100 keV
Method: single particle / : McMullan G, Naydenova K, Mihaylov D, Peet MJ, Wilson H, Yamashita K, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy M, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ

EMDB-17959:
Structure of bacterial ribosome determined by cryoEM at 100 keV
Method: single particle / : McMullan G, Naydenova K, Mihaylov D, Peet MJ, Wilson H, Yamashita K, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy M, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ

EMDB-17960:
Structure of GABAAR determined by cryoEM at 100 keV
Method: single particle / : McMullan G, Naydenova K, Mihaylov D, Peet MJ, Wilson H, Yamashita K, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy M, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more