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TitleShigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213
Journal, issue, pagesTo Be Published
Publish dateJul 7, 2024 (structure data deposition date)
AuthorsNaydenova K / Boyle KB / Pathe C / Pothukuchi P / Crespillo-Casado A / Otten EG / Hammoudi P-M / Randow F
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.9 - 3.4 Å
Structure data

50913

9g08

EMDB-50913, PDB-9g08:
Structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.3 Å

50914

9g09

EMDB-50914, PDB-9g09:
Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-50915: Consensus refinement of the complex between human RNF213 and the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-50916: Local refinement of the RNF213 CBM domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-50917: Local refinement of the RNF213 stalk domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-50918: Local refinement of the RNF213 ATPase domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-50919: Local refinement of the RNF213 C-terminal and hinge domains in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-50920: Local refinement of the RNF213 E3 module in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-50921: Local refinement of the RNF213 RING domain and the IpaH1.4 LRR domain in the structure of human RNF213 bound to the secreted effector IpaH1.4 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-50922: Consensus refinement of the complex between human RNF213 and the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-50923: Local refinement of the RNF213 CBM domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-50924: Local refinement of the RNF213 stalk domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-50925: Local refinement of the RNF213 ATPase domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-50926: Local refinement of the RNF213 C-terminal and hinge domains in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-50928: Local refinement of the RNF213 E3 module in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-50929: Local refinement of the RNF213 RING domain and the IpaH2.5 LRR domain in the structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Method: EM (single particle) / Resolution: 3.4 Å

Chemicals

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

Source
  • homo sapiens (human)
  • shigella flexneri 5a str. m90t (bacteria)
  • Homo (humans)
KeywordsANTIMICROBIAL PROTEIN / RNF213 / IpaH1.4 / IpaH / E3 ligase / RING / LRR / NEL / secreted effector / Shigella / inhibitor / complex / AAA ATPase / IpaH2.5

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