[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 430 items for (author: castro & a)

EMDB-66115:
Cryo-EM structure of the LbCas12a-Lid2-crRNA-DNA complex
Method: single particle / : Omura SN, Warren Villegas R, Van der Oost J, Nureki O, Warren VR, Hirano H, Kusakizako T, Kise Y, Lebbink HGJ, Itoh Y

EMDB-53124:
Cryo-EM map (3D Refined) of the initiator P-tRNA bound to the N-terminus of Initiation Factor 3 (IF3) in the context of the bacterial preinitiation complex (PIC)
Method: single particle / : Morici M, Dallape A, Sanchez-Castro A, Wilson DN, Milon P

EMDB-53125:
Cryo-EM map (3D Refined) of the aptamer 343 bound to the N-terminus of Initiation Factor 3 (IF3) in the context of the bacterial preinitiation complex (PIC)
Method: single particle / : Morici M, Dallape A, Sanchez-Castro A, Wilson DN, Milon P

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-48131:
Cryo-EM map of 12 VRC35 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48133:
Cryo-EM local map of 4 VRC35 Fabs bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48134:
Cryo-EM local map of 2 VRC35 Fabs bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-72009:
Q10M-055 Fab in complex with HIV-1 Env Q23 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72031:
Q12QBM-007 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72033:
Q9M-023 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-72035:
Q12BBM-069 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-74449:
Q7M-675 Fab in complex with HIV-1 Env WITO NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9py5:
Q10M-055 Fab in complex with HIV-1 Env Q23 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9pyd:
Q12QBM-007 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9pyh:
Q9M-023 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9pyk:
Q12BBM-069 Fab in complex with HIV-1 Env BG505 NFL TD CC3+
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-47885:
Cryo-EM local map of dimerized VRC36 Fabs
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47893:
Cryo-EM map of 2 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47895:
Cryo-EM map of 4 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-70607:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9om5:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49964:
Global map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemaglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-44588:
human ZYG11B and EloginB/C complex
Method: single particle / : Liu X, Gross JD

EMDB-44589:
human ZYG11B ElonginB/C complex binding to SARS-CoV2 Orf10 protein
Method: single particle / : Liu X, Gross JD

EMDB-44630:
human CRL2-ZYG11B complex
Method: single particle / : Liu X, Gross JD

EMDB-44631:
Human CRL-2 ZYG11B binding to human NLRP1 Gly/N degron
Method: single particle / : Liu X, Gross JD

PDB-9bid:
human ZYG11B and EloginB/C complex
Method: single particle / : Liu X, Gross JD

PDB-9bie:
human ZYG11B ElonginB/C complex binding to SARS-CoV2 Orf10 protein
Method: single particle / : Liu X, Gross JD

PDB-9bj8:
human CRL2-ZYG11B complex
Method: single particle / : Liu X, Gross JD

PDB-9bj9:
Human CRL-2 ZYG11B binding to human NLRP1 Gly/N degron
Method: single particle / : Liu X, Gross JD

EMDB-49185:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST4
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49186:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST6 and monoclonal fab 045-09 2B05
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49187:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST10
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49188:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST13
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49189:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST14
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49190:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST15
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49191:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST17
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49192:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST18
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49097:
H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST15
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49098:
H1 hemagglutinin (A/California/04/2009) with E47K mutation in HA2 in complex with central stem-targeting Fab ST10
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49099:
H5 hemagglutinin (A/Jiangsu/NJ210/2023) in complex with central stem-targeting Fab ST14
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49100:
H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST4
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-51788:
Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica
Method: single particle / : Gardiner AT, Jing Y, Bina D, Mujakic I, Gardian Z, Kaftan D, Joosten M, Jakobi A, Castro-Hartmann P, Qian P, Koblizek M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more