[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 78 items for (author: arkinson & c)

EMDB-71534:
Nub1/Fat10-processing human 26S proteasome with Rpt2 at top of spiral staircase and partially unfolded Eos (AAA+ motor locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-71537:
Nub1/Fat10-processing human 26S proteasome with Rpt5 at top of spiral staircase (AAA+ locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-71538:
Nub1/Fat10-processing human 26S proteasome with Rpt1 at top of spiral staircase (AAA+ locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-71581:
Nub1/Fat10-processing human 26S proteasome bound to TXNL1 with Rpt3 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-71583:
NUB1/FAT10-processing human 26S proteasome bound to TXNL1 with Rpt6 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-71584:
Nub1/Fat10-processing human 26S proteasome with Rpt4 at top of spiral staircase (AAA+ motor locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9pdi:
Nub1/Fat10-processing human 26S proteasome with Rpt2 at top of spiral staircase and partially unfolded Eos (AAA+ motor locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9pdl:
Nub1/Fat10-processing human 26S proteasome with Rpt5 at top of spiral staircase (AAA+ locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9pdn:
Nub1/Fat10-processing human 26S proteasome with Rpt1 at top of spiral staircase (AAA+ locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9pf1:
Nub1/Fat10-processing human 26S proteasome with Rpt4 at top of spiral staircase (AAA+ motor locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-45579:
Yeast 26S proteasome non-substrate-engaged (S1 state)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9cgc:
Yeast 26S proteasome non-substrate-engaged (S1 state)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47719:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt5 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47720:
Human proteasome in resting state conformation bound to TXNL1 in backward conformation
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47721:
Human proteasome in resting state conformation bound to TXNL1 in Forward conformation
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47722:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt1 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47723:
Nub1/Fat10-processing human 26S proteasome with Rpt6 at top of spiral staircase (AAA+ motor locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47724:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt4 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47725:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt3 at top of spiral staircase (locally refined on the AAA+ motor)
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47726:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt2 at top of spiral staircase and partially unfolded Eos
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-47727:
Nub1/Fat10-processing human 26S proteasome with Rpt2 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8g:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt5 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8h:
Human proteasome in resting state conformation bound to TXNL1 in backward conformation
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8i:
Human proteasome in resting state conformation bound to TXNL1 in Forward conformation
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8j:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt1 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8k:
Nub1/Fat10-processing human 26S proteasome with Rpt6 at top of spiral staircase (AAA+ motor locally refined)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8l:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt4 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8n:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt3 at top of spiral staircase (locally refined on the AAA+ motor)
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8o:
Nub1/Fat10-processing human 26S proteasome bound to Txnl1 with Rpt2 at top of spiral staircase and partially unfolded Eos
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-9e8q:
Nub1/Fat10-processing human 26S proteasome with Rpt2 at top of spiral staircase
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-42506:
Non-substrate-engaged human 26S proteasome with Nub1/FAT10 bound to Rpn1
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-42507:
Nub1/Fat10-processing human 26S proteasome
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-42508:
Rpn1/Nub1UBL-focused alignment of the non-substrate-engaged human 26S proteasome
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-8usb:
Non-substrate-engaged human 26S proteasome with Nub1/FAT10 bound to Rpn1
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-8usc:
Nub1/Fat10-processing human 26S proteasome
Method: single particle / : Arkinson C, Gee CL, Martin A

PDB-8usd:
Rpn1/Nub1UBL-focused alignment of the non-substrate-engaged human 26S proteasome
Method: single particle / : Arkinson C, Gee CL, Martin A

EMDB-50316:
USP1 bound to KSQ-4279 and ubiquitin conjugated to FANCD2 (focused refinement)
Method: single particle / : Rennie ML, Gundogdu M, Walden H

EMDB-50317:
USP1 bound to ML323 and ubiquitin conjugated to FANCD2 (ordered subset, focused refinement)
Method: single particle / : Rennie ML, Gundogdu M, Walden H

PDB-9fci:
USP1 bound to KSQ-4279 and ubiquitin conjugated to FANCD2 (focused refinement)
Method: single particle / : Rennie ML, Gundogdu M, Walden H

PDB-9fcj:
USP1 bound to ML323 and ubiquitin conjugated to FANCD2 (ordered subset, focused refinement)
Method: single particle / : Rennie ML, Gundogdu M, Walden H

EMDB-43498:
Mechanistic Insights Revealed by YbtPQ in the Occluded State
Method: single particle / : Hu W, Parkinson C, Zheng H

PDB-8vsi:
Mechanistic Insights Revealed by YbtPQ in the Occluded State
Method: single particle / : Hu W, Parkinson C, Zheng H

PDB-8c5v:
Chemotaxis core signalling unit from E protein lysed E. coli cells
Method: subtomogram averaging / : Cassidy CK, Qin Z, Zhang P

EMDB-15641:
Structure of the Native Chemotaxis Core Signalling Complex from E-gene lysed E. coli cells.
Method: subtomogram averaging / : Qin Z, Zhang P

EMDB-15642:
Native Chemotaxis Core Signalling Complex from E. coli, with focused alignment on the baseplate (CheA-CheW)
Method: subtomogram averaging / : Qin Z, Zhang P

EMDB-15643:
Native Chemotaxis Core Signalling Complex from E. coli, Focused alignment on ligand binding domain
Method: subtomogram averaging / : Qin Z, Zhang P

EMDB-14694:
Structure of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA
Method: single particle / : Lemonidis K, Rennie ML, Arkinson C, Streetley J, Clarke M, Chaugule VK, Walden H

PDB-7zf1:
Structure of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA
Method: single particle / : Lemonidis K, Rennie ML, Arkinson C, Streetley J, Clarke M, Chaugule VK, Walden H

EMDB-14719:
FANCD2 Middle and C-terminal domains with USP1-NTE (focused refinement)
Method: single particle / : Rennie ML, Walden H

EMDB-14720:
USP1 bound to ubiquitin conjugated to FANCD2 (focused refinement)
Method: single particle / : Rennie ML, Walden H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more