Author results

2ZK0
  • Download 2zk0
  • View 2zk0
Molmil generated image of 2zk0
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN
Descriptor:Peroxisome proliferator-activated receptor gamma
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK1
  • Download 2zk1
  • View 2zk1
Molmil generated image of 2zk1
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEXED WITH 15-DEOXY-DELTA12,14-PROSTAGLANDIN J2
Descriptor:Peroxisome proliferator-activated receptor gamma, (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK2
  • Download 2zk2
  • View 2zk2
Molmil generated image of 2zk2
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEXED WITH GLUTATHION CONJUGATED 15-DEOXY-DELTA12,14-PROSTAGLANDIN J2
Descriptor:Peroxisome proliferator-activated receptor gamma, GLUTATHIONE, (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK3
  • Download 2zk3
  • View 2zk3
Molmil generated image of 2zk3
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEXED WITH 8-OXO-EICOSATETRAENOIC ACID
Descriptor:Peroxisome proliferator-activated receptor gamma, (5E,11E,14E)-8-oxoicosa-5,9,11,14-tetraenoic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK4
  • Download 2zk4
  • View 2zk4
Molmil generated image of 2zk4
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEXED WITH 15-OXO-EICOSATETRAENOIC ACID
Descriptor:Peroxisome proliferator-activated receptor gamma, (5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK5
  • Download 2zk5
  • View 2zk5
Molmil generated image of 2zk5
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEXED WITH NITRO-233
Descriptor:Peroxisome proliferator-activated receptor gamma, 3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids
J.Mol.Biol., 385, 2009
2ZK6
  • Download 2zk6
  • View 2zk6
Molmil generated image of 2zk6
HUMAN PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA LIGAND BINDING DOMAIN COMPLEXED WITH C8-BODIPY
Descriptor:Peroxisome proliferator-activated receptor gamma, difluoro(5-{2-[(5-octyl-1H-pyrrol-2-yl-kappaN)methylidene]-2H-pyrrol-5-yl-kappaN}pentanoato)boron
Authors:Waku, T., Shiraki, T., Oyama, T., Fujimoto, Y., Morikawa, K.
Deposit date:2008-03-12
Release date:2009-02-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
2ZVT
  • Download 2zvt
  • View 2zvt
Molmil generated image of 2zvt
CYS285SER MUTANT PPARGAMMA LIGAND-BINDING DOMAIN COMPLEXED WITH 15-DEOXY-DELTA12,14-PROSTAGLANDIN J2
Descriptor:Peroxisome proliferator-activated receptor gamma, (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid
Authors:Waku, T., Oyama, T., Shiraki, T., Morikawa, K.
Deposit date:2008-11-19
Release date:2009-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure of mutant PPARgamma LBD complexed with 15d-PGJ2: novel modulation mechanism of PPARgamma/RXRalpha function by covalently bound ligands
Febs Lett., 583, 2009
3ADS
  • Download 3ads
  • View 3ads
Molmil generated image of 3ads
HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH INDOMETHACIN
Descriptor:Peroxisome proliferator-activated receptor gamma, INDOMETHACIN
Authors:Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADT
  • Download 3adt
  • View 3adt
Molmil generated image of 3adt
HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH 5-HYDROXY-INDOLE ACETATE
Descriptor:Peroxisome proliferator-activated receptor gamma, (5-hydroxy-1H-indol-3-yl)acetic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADU
  • Download 3adu
  • View 3adu
Molmil generated image of 3adu
HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH 5-METHOXY-INDOLE ACETATE
Descriptor:Peroxisome proliferator-activated receptor gamma, (5-methoxy-1H-indol-3-yl)acetic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADV
  • Download 3adv
  • View 3adv
Molmil generated image of 3adv
HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH SEROTONIN
Descriptor:Peroxisome proliferator-activated receptor gamma, SEROTONIN
Authors:Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADW
  • Download 3adw
  • View 3adw
Molmil generated image of 3adw
HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH 5-METHOXY-INDOLE ACETATE AND 15-OXO-EICOSATETRAENOIC ACID
Descriptor:Peroxisome proliferator-activated receptor gamma, (5-methoxy-1H-indol-3-yl)acetic acid, (5E,8E,11Z,13E)-15-oxoicosa-5,8,11,13-tetraenoic acid
Authors:Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
3ADX
  • Download 3adx
  • View 3adx
Molmil generated image of 3adx
HUMAN PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH INDOMETHACIN AND NITRO-233
Descriptor:Peroxisome proliferator-activated receptor gamma, 3-[5-(2-nitropent-1-en-1-yl)furan-2-yl]benzoic acid, INDOMETHACIN
Authors:Waku, T., Shiraki, T., Oyama, T., Morikawa, K.
Deposit date:2010-01-29
Release date:2010-12-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29, 2010
2ZNO
  • Download 2zno
  • View 2zno
Molmil generated image of 2zno
HUMAN PPAR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST TIPP703
Descriptor:Peroxisome proliferator-activated receptor gamma, (2S)-2-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}benzyl)butanoic acid
Authors:Oyama, T., Waku, T., Kasuga, J., Miyachi, H., Morikawa, K.
Deposit date:2008-04-30
Release date:2009-05-05
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures
Acta Crystallogr.,Sect.D, 65, 2009
3VSO
  • Download 3vso
  • View 3vso
Molmil generated image of 3vso
HUMAN PPAR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH A GAMMA SELECTIVE AGONIST MEKT21
Descriptor:Peroxisome proliferator-activated receptor gamma, (2R)-2-benzyl-3-[4-propoxy-3-({[4-(pyrimidin-2-yl)benzoyl]amino}methyl)phenyl]propanoic acid
Authors:Oyama, T., Waku, T., Ohashi, M., Morikawa, K., Miyachi, H.
Deposit date:2012-04-30
Release date:2013-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and synthesis of a series of alpha-benzyl phenylpropanoic acid-type peroxisome proliferator-activated receptor (PPAR) gamma partial agonists with improved aqueous solubility
Bioorg.Med.Chem., 21, 2013
3VSP
  • Download 3vsp
  • View 3vsp
Molmil generated image of 3vsp
HUMAN PPAR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH A GAMMA SELECTIVE AGONIST MEKT28
Descriptor:Peroxisome proliferator-activated receptor gamma, (2R)-2-benzyl-3-[3-({[4-(piperidin-1-yl)benzoyl]amino}methyl)-4-propoxyphenyl]propanoic acid
Authors:Oyama, T., Waku, T., Ohashi, M., Morikawa, K., Miyachi, H.
Deposit date:2012-04-30
Release date:2013-05-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28
To be Published
3W0G
  • Download 3w0g
  • View 3w0g
Molmil generated image of 3w0g
CRYSTAL STRUCTURE OF RAT VDR LIGAND BINDING DOMAIN IN COMPLEX WITH NOVEL NONSECOSTEROIDAL LIGANDS
Descriptor:Vitamin D3 receptor, Mediator of RNA polymerase II transcription subunit 1, (2S)-3-{4-[2-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}phenyl)propan-2-yl]phenoxy}propane-1,2-diol
Authors:Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
Deposit date:2012-10-30
Release date:2013-10-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands.
Febs Lett., 587, 2013
3W0H
  • Download 3w0h
  • View 3w0h
Molmil generated image of 3w0h
CRYSTAL STRUCTURE OF RAT VDR LIGAND BINDING DOMAIN IN COMPLEX WITH NOVEL NONSECOSTEROIDAL LIGANDS
Descriptor:Vitamin D3 receptor, Mediator of RNA polymerase II transcription subunit 1, (2S)-3-{4-[4-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}phenyl)heptan-4-yl]phenoxy}propane-1,2-diol
Authors:Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
Deposit date:2012-10-30
Release date:2013-10-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands.
Febs Lett., 587, 2013
3W0I
  • Download 3w0i
  • View 3w0i
Molmil generated image of 3w0i
CRYSTAL STRUCTURE OF RAT VDR LIGAND BINDING DOMAIN IN COMPLEX WITH NOVEL NONSECOSTEROIDAL LIGANDS
Descriptor:Vitamin D3 Receptor, Mediator of RNA polymerase II transcription subunit 1, (2S)-3-{4-[3-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}phenyl)pentan-3-yl]phenoxy}propane-1,2-diol
Authors:Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
Deposit date:2012-10-30
Release date:2013-10-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands.
Febs Lett., 587, 2013
3W0J
  • Download 3w0j
  • View 3w0j
Molmil generated image of 3w0j
CRYSTAL STRUCTURE OF RAT VDR LIGAND BINDING DOMAIN IN COMPLEX WITH NOVEL NONSECOSTEROIDAL LIGANDS
Descriptor:Vitamin D3 Receptor, Mediator of RNA polymerase II transcription subunit 1, (2S)-3-{4-[2-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)propan-2-yl]-2-methylphenoxy}propane-1,2-diol
Authors:Shimizu, T., Asano, L., Kuwabara, N., Ito, I., Waku, T., Yanagisawa, J., Miyachi, H.
Deposit date:2012-10-30
Release date:2013-10-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis for vitamin D receptor agonism by novel non-secosteroidal ligands.
Febs Lett., 587, 2013
2ZNN
  • Download 2znn
  • View 2znn
Molmil generated image of 2znn
HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST TIPP703
Descriptor:Peroxisome proliferator-activated receptor alpha, (2S)-2-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}benzyl)butanoic acid
Authors:Oyama, T., Toyota, K., Kasuga, J., Miyachi, H., Morikawa, K.
Deposit date:2008-04-30
Release date:2009-05-05
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures
Acta Crystallogr.,Sect.D, 65, 2009
2ZNP
  • Download 2znp
  • View 2znp
Molmil generated image of 2znp
HUMAN PPAR DELTA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST TIPP204
Descriptor:Peroxisome proliferator-activated receptor delta, HEPTYL-BETA-D-GLUCOPYRANOSIDE, (2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid
Authors:Oyama, T., Hirakawa, Y., Nagasawa, N., Miyachi, H., Morikawa, K.
Deposit date:2008-04-30
Release date:2009-05-05
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (3 Å)
Cite:Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures
Acta Crystallogr.,Sect.D, 65, 2009
2ZNQ
  • Download 2znq
  • View 2znq
Molmil generated image of 2znq
HUMAN PPAR DELTA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST TIPP401
Descriptor:Peroxisome proliferator-activated receptor delta, HEPTYL-BETA-D-GLUCOPYRANOSIDE, (2S)-2-{3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]-4-methoxybenzyl}butanoic acid
Authors:Oyama, T., Hirakawa, Y., Nagasawa, N., Miyachi, H., Morikawa, K.
Deposit date:2008-04-30
Release date:2009-05-05
Last modified:2016-03-02
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures
Acta Crystallogr.,Sect.D, 65, 2009
3AN3
  • Download 3an3
  • View 3an3
Molmil generated image of 3an3
HUMAN PPAR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH A GAMMA SELECTIVE AGONIST MO3S
Descriptor:Peroxisome proliferator-activated receptor gamma, (2S)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid
Authors:Oyama, T., Ohashi, M., Waku, T., Miyachi, H., Morikawa, K.
Deposit date:2010-08-30
Release date:2011-07-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship
J.Med.Chem., 54, 2011
<12>