3ADU

Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate

Summary for 3ADU

Related3ADS 3ADT 3ADV 3ADW 3ADX
DescriptorPeroxisome proliferator-activated receptor gamma, (5-methoxy-1H-indol-3-yl)acetic acid (3 entities in total)
Functional Keywordsnuclear receptor, ligand-dependent transcription factor, ligand-binding domain, activator, diabetes mellitus, disease mutation, dna-binding, metal-binding, nucleus, obesity, phosphoprotein, receptor, transcription, transcription regulation, zinc-finger
Biological sourceHomo sapiens (human)
Cellular locationNucleus P37231
Total number of polymer chains2
Total molecular weight66413.7
Authors
Waku, T.,Shiraki, T.,Oyama, T.,Morikawa, K. (deposition date: 2010-01-29, release date: 2010-12-22, Last modification date: 2011-07-13)
Primary citation
Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K.
The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites
Embo J., 29:3395-3407, 2010
PubMed: 20717101 (PDB entries with the same primary citation)
DOI: 10.1038/emboj.2010.197
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.77 Å)
NMR Information
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.273252.4%7.6%6.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3adu
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Molmil generated image of 3adu
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Molmil generated image of 3adu
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More Biological unit images

Molmil generated image of 3adu
no rotation
Molmil generated image of 3adu
rotated about x axis by 90°
Molmil generated image of 3adu
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (3adu.pdb1.gz [88.32 KB])
Coordinate files for Biological unit (3adu.pdb2.gz [88.95 KB])