PDB: 48855 resultsInfo pagesStatus searchChemie searchBIRD

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5C51	Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma Descriptor: DNA, DNA (5'-D(*(AD)P*AP*AP*AP*CP*GP*AP*GP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*GP*TP*AP*C)-3'), DNA polymerase subunit gamma-1, ... Authors: Sohl, C.D, Szymanski, M.R, Mislak, A.C, Shumate, C.K, Amiralaei, S, Schinazi, R.F, Anderson, K.S, Whitney, Y.Y. Deposit date: 2015-06-19 Release date: 2016-05-11 Last modified: 2024-12-25 Method: X-RAY DIFFRACTION (3.426 Å) Cite: Probing the structural and molecular basis of nucleotide selectivity by human mitochondrial DNA polymerase gamma. Proc.Natl.Acad.Sci.USA, 112, 2015
104D	DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN Descriptor: DNA/RNA (5'-R(*CP*GP*CP*G)-D(P*TP*AP*TP*AP*CP*GP*CP*G)-3') Authors: Zhu, L, Salazar, M, Reid, B.R. Deposit date: 1994-12-16 Release date: 1995-03-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: DNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2. Biochemistry, 34, 1995
1B79	N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB Descriptor: DnaB Helicase Authors: Fass, D, Bogden, C.E, Berger, J.M. Deposit date: 1999-01-28 Release date: 1999-06-30 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of the N-terminal domain of the DnaB hexameric helicase. Structure Fold.Des., 7, 1999
6LWQ	Crystal structure of human NEIL1(R242) bound to duplex DNA containing a C:T mismatch Descriptor: DNA (5'-D(*CP*GP*TP*CP*CP*AP*TP*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*G)-3'), Endonuclease 8-like 1 Authors: Liu, M.H, Zhang, J, Zhu, C.X, Zhang, X.X, Gao, Y.Q, Yi, C.Q. Deposit date: 2020-02-07 Release date: 2021-06-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.89 Å) Cite: DNA repair glycosylase hNEIL1 triages damaged bases via competing interaction modes. Nat Commun, 12, 2021
8EJ6	Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGAGGAATGGGG) Descriptor: DNA (5'-D(*AP*AP*TP*AP*AP*GP*AP*GP*GP*AP*AP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*CP*AP*TP*TP*CP*CP*TP*CP*TP*TP*AP*T)-3'), Transcription factor PU.1 Authors: Terrell, J.R, Poon, G.M.K. Deposit date: 2022-09-16 Release date: 2023-07-05 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.39 Å) Cite: DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
3KUY	DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent Descriptor: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ... Authors: Wu, B, Davey, C.A. Deposit date: 2009-11-28 Release date: 2010-01-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.9 Å) Cite: DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent Nucleic Acids Res., 38, 2010
5T4I	A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme Descriptor: DNA (5'-D(*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), MANGANESE (II) ION, ... Authors: Szymanski, M.R, Yin, W.Y. Deposit date: 2016-08-29 Release date: 2017-05-17 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.389 Å) Cite: A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease. Nat Commun, 8, 2017
5T5C	A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme Descriptor: DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*CP*GP*TP*CP*AP*G)-3'), MAGNESIUM ION, ... Authors: Szymanski, M.R, Yin, W.Y. Deposit date: 2016-08-30 Release date: 2017-05-17 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.851 Å) Cite: A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease. Nat Commun, 8, 2017
6CBR	DnaG Primase C-terminal domain complex with SSB C-terminal peptide Descriptor: DNA primase,single-stranded DNA-binding protein chimera Authors: Oakley, A.J, Lo, A.T.Y. Deposit date: 2018-02-05 Release date: 2019-02-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: DnaG Primase C-terminal domain complex with SSB C-terminal peptide To be Published
8OJJ	Cryo-EM structure of the DnaD-NTD tetramer Descriptor: DNA replication protein DnaD Authors: Winterhalter, C, Pelliciari, S, Cronin, N, Costa, T.R.D, Murray, H, Ilangovan, A. Deposit date: 2023-03-24 Release date: 2023-05-17 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (5.47 Å) Cite: The DNA replication initiation protein DnaD recognises a specific strand of the Bacillus subtilis chromosome origin. Nucleic Acids Res., 51, 2023
4CRO	PROTEIN-DNA CONFORMATIONAL CHANGES IN THE CRYSTAL STRUCTURE OF A LAMBDA CRO-OPERATOR COMPLEX Descriptor: DNA (5'-D(*TP*AP*TP*CP*AP*CP*CP*GP*CP*GP*GP*GP*TP*GP*AP*TP*A)-3'), PROTEIN (LAMBDA CRO) Authors: Brennan, R.G, Roderick, S.L, Takeda, Y, Matthews, B.W. Deposit date: 1992-01-15 Release date: 1992-01-15 Last modified: 2022-11-23 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Protein-DNA conformational changes in the crystal structure of a lambda Cro-operator complex. Proc.Natl.Acad.Sci.USA, 87, 1990
1D17	DNA-NOGALAMYCIN INTERACTIONS Descriptor: DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3'), NOGALAMYCIN Authors: Egli, M, Williams, L.D, Frederick, C.A, Rich, A. Deposit date: 1990-08-08 Release date: 1991-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA-nogalamycin interactions. Biochemistry, 30, 1991
4NRV	Crystal Structure of non-edited human NEIL1 Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endonuclease 8-like 1 Authors: Prakash, A, Doublie, S. Deposit date: 2013-11-27 Release date: 2014-01-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.601 Å) Cite: Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing. Dna Repair, 14, 2014
3U6F	Mouse TREX1 D200N mutant Descriptor: 1,4-BUTANEDIOL, 5'-D(*GP*AP*CP*G)-3', MAGNESIUM ION, ... Authors: Bailey, S.L, Harvey, S, Perrino, F.W, Hollis, T. Deposit date: 2011-10-12 Release date: 2011-12-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. Dna Repair, 11, 2012
5GUJ	Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG Descriptor: DNA primase Authors: Zhou, Y, Liu, Z, Wang, G. Deposit date: 2016-08-29 Release date: 2017-04-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria Sci Rep, 7, 2017
7M5O	Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA Descriptor: CasPhi, ZINC ION, crRNA Authors: Pausch, P, Soczek, K, Nogales, E, Doudna, J. Deposit date: 2021-03-24 Release date: 2021-08-04 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: DNA interference states of the hypercompact CRISPR-Cas Phi effector. Nat.Struct.Mol.Biol., 28, 2021
3U3Y	Mouse TREX1 D200H mutant Descriptor: 1,4-BUTANEDIOL, 5'-D(*GP*AP*CP*G)-3', CALCIUM ION, ... Authors: Bailey, S.L, Harvey, S, Perrino, F.W, Hollis, T. Deposit date: 2011-10-06 Release date: 2011-12-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. Dna Repair, 11, 2012
2DNJ	DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I-OCTAMER COMPLEX Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-D(*GP*CP*GP*AP*TP*C)-3', 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', ... Authors: Lahm, A, Suck, D. Deposit date: 1986-10-21 Release date: 1994-01-31 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2 Å) Cite: DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex J.Mol.Biol., 222, 1991
6GDR	DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases Descriptor: ADENOSINE MONOPHOSPHATE, DNA, DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), ... Authors: Williamson, A, Grigic, M, Leiros, H.K.S. Deposit date: 2018-04-24 Release date: 2018-07-25 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.33 Å) Cite: DNA binding with a minimal scaffold: structure-function analysis of Lig E DNA ligases. Nucleic Acids Res., 46, 2018
1PAR	DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE Descriptor: DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3'), DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3'), PROTEIN (ARC REPRESSOR) Authors: Raumann, B.E, Rould, M.A, Pabo, C.O, Sauer, R.T. Deposit date: 1994-03-22 Release date: 1994-07-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DNA recognition by beta-sheets in the Arc repressor-operator crystal structure. Nature, 367, 1994
5W35	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 1-nucleotide overhang Descriptor: DNA primase, synthetic DNA oligomer 5'-CCACTTCCGGTC, synthetic DNA oligomer 5'-TGACCGGAAGTGG Authors: Hou, C, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.31 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W34	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with double-stranded DNA GACCGGAAGTGG Descriptor: DNA oligomer 5'-CCACTTCCGGTC, DNA oligomer 5'-GACCGGAAGTGG, DNA primase Authors: Hou, C, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W33	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG Descriptor: DNA primase, SULFATE ION Authors: Hou, C, Biswas, T, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W36	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 6-nucleotide overhang Descriptor: DNA primase, STRONTIUM ION, synthetic DNA 5'-TATCGTCCCGCCTC Authors: Hou, C, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
6TEM	CENP-A nucleosome core particle with 145 base pairs of the Widom 601 sequence by cryo-EM Descriptor: Histone H2A, Histone H2B 1.1, Histone H3-like centromeric protein A, ... Authors: Boopathi, R, Danev, R, Petosa, C, Bednar, J. Deposit date: 2019-11-12 Release date: 2020-04-08 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends. Nucleic Acids Res., 48, 2020

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