PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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1D17	DNA-NOGALAMYCIN INTERACTIONS Descriptor: DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3'), NOGALAMYCIN Authors: Egli, M, Williams, L.D, Frederick, C.A, Rich, A. Deposit date: 1990-08-08 Release date: 1991-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA-nogalamycin interactions. Biochemistry, 30, 1991
4CRO	PROTEIN-DNA CONFORMATIONAL CHANGES IN THE CRYSTAL STRUCTURE OF A LAMBDA CRO-OPERATOR COMPLEX Descriptor: DNA (5'-D(*TP*AP*TP*CP*AP*CP*CP*GP*CP*GP*GP*GP*TP*GP*AP*TP*A)-3'), PROTEIN (LAMBDA CRO) Authors: Brennan, R.G, Roderick, S.L, Takeda, Y, Matthews, B.W. Deposit date: 1992-01-15 Release date: 1992-01-15 Last modified: 2022-11-23 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Protein-DNA conformational changes in the crystal structure of a lambda Cro-operator complex. Proc.Natl.Acad.Sci.USA, 87, 1990
7M5O	Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA Descriptor: CasPhi, ZINC ION, crRNA Authors: Pausch, P, Soczek, K, Nogales, E, Doudna, J. Deposit date: 2021-03-24 Release date: 2021-08-04 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: DNA interference states of the hypercompact CRISPR-Cas Phi effector. Nat.Struct.Mol.Biol., 28, 2021
3U6F	Mouse TREX1 D200N mutant Descriptor: 1,4-BUTANEDIOL, 5'-D(*GP*AP*CP*G)-3', MAGNESIUM ION, ... Authors: Bailey, S.L, Harvey, S, Perrino, F.W, Hollis, T. Deposit date: 2011-10-12 Release date: 2011-12-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. Dna Repair, 11, 2012
5GUJ	Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG Descriptor: DNA primase Authors: Zhou, Y, Liu, Z, Wang, G. Deposit date: 2016-08-29 Release date: 2017-04-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria Sci Rep, 7, 2017
3U3Y	Mouse TREX1 D200H mutant Descriptor: 1,4-BUTANEDIOL, 5'-D(*GP*AP*CP*G)-3', CALCIUM ION, ... Authors: Bailey, S.L, Harvey, S, Perrino, F.W, Hollis, T. Deposit date: 2011-10-06 Release date: 2011-12-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Defects in DNA degradation revealed in crystal structures of TREX1 exonuclease mutations linked to autoimmune disease. Dna Repair, 11, 2012
6CBR	DnaG Primase C-terminal domain complex with SSB C-terminal peptide Descriptor: DNA primase,single-stranded DNA-binding protein chimera Authors: Oakley, A.J, Lo, A.T.Y. Deposit date: 2018-02-05 Release date: 2019-02-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: DnaG Primase C-terminal domain complex with SSB C-terminal peptide To be Published
4NRV	Crystal Structure of non-edited human NEIL1 Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endonuclease 8-like 1 Authors: Prakash, A, Doublie, S. Deposit date: 2013-11-27 Release date: 2014-01-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.601 Å) Cite: Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing. Dna Repair, 14, 2014
8BZU	Double-ion dependent DNA quadruplex structure formed by C.elegans telomeric sequence Descriptor: DNA (5'-D(*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*CP*TP*TP*AP*GP*GP*C)-3') Authors: Lenarcic Zivkovic, M, Trantirek, L. Deposit date: 2022-12-15 Release date: 2024-03-13 Method: SOLUTION NMR Cite: DNA Quadruplex Structure with a Unique Cation Dependency. Angew.Chem.Int.Ed.Engl., 63, 2024
3KUY	DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent Descriptor: 2-[(2R)-oxiran-2-ylmethyl]-1H-benzo[de]isoquinoline-1,3(2H)-dione, DNA (145-MER), Histone H2A, ... Authors: Wu, B, Davey, C.A. Deposit date: 2009-11-28 Release date: 2010-01-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.9 Å) Cite: DNA stretching in the nucleosome facilitates alkylation by an intercalating antitumour agent Nucleic Acids Res., 38, 2010
1PAR	DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE Descriptor: DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3'), DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3'), PROTEIN (ARC REPRESSOR) Authors: Raumann, B.E, Rould, M.A, Pabo, C.O, Sauer, R.T. Deposit date: 1994-03-22 Release date: 1994-07-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DNA recognition by beta-sheets in the Arc repressor-operator crystal structure. Nature, 367, 1994
5W35	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 1-nucleotide overhang Descriptor: DNA primase, synthetic DNA oligomer 5'-CCACTTCCGGTC, synthetic DNA oligomer 5'-TGACCGGAAGTGG Authors: Hou, C, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.31 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
6FFR	DNA-RNA Hybrid Quadruplex with Flipped Tetrad Descriptor: DNA/RNA (5'-R(*G)-D(P*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*GP*AP*C)-R(P*G)-D(P*GP*G)-3') Authors: Haase, L, Dickerhoff, J, Weisz, K. Deposit date: 2018-01-09 Release date: 2018-09-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: DNA-RNA Hybrid Quadruplexes Reveal Interactions that Favor RNA Parallel Topologies. Chemistry, 24, 2018
5W34	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with double-stranded DNA GACCGGAAGTGG Descriptor: DNA oligomer 5'-CCACTTCCGGTC, DNA oligomer 5'-GACCGGAAGTGG, DNA primase Authors: Hou, C, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W36	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 6-nucleotide overhang Descriptor: DNA primase, STRONTIUM ION, synthetic DNA 5'-TATCGTCCCGCCTC Authors: Hou, C, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5W33	Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG Descriptor: DNA primase, SULFATE ION Authors: Hou, C, Biswas, T, Tsodikov, O.V. Deposit date: 2017-06-07 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018
5E50	APLF/XRCC4 complex Descriptor: Aprataxin and PNK-like factor, MAGNESIUM ION, XRCC4 Authors: Cherry, A.L, Smerdon, S.J. Deposit date: 2015-10-07 Release date: 2015-11-18 Method: X-RAY DIFFRACTION (1.376 Å) Cite: Versatility in phospho-dependent molecular recognition of the XRCC1 and XRCC4 DNA-damage scaffolds by aprataxin-family FHA domains. DNA Repair (Amst.), 35, 2015
122D	DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') Authors: Hahn, M, Heinemann, U. Deposit date: 1993-05-03 Release date: 1993-10-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR. Acta Crystallogr.,Sect.D, 49, 1993
123D	DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3') Authors: Hahn, M, Heinemann, U. Deposit date: 1993-05-03 Release date: 1993-10-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR. Acta Crystallogr.,Sect.D, 49, 1993
2DNJ	DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I-OCTAMER COMPLEX Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5'-D(*GP*CP*GP*AP*TP*C)-3', 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', ... Authors: Lahm, A, Suck, D. Deposit date: 1986-10-21 Release date: 1994-01-31 Last modified: 2020-10-21 Method: X-RAY DIFFRACTION (2 Å) Cite: DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex J.Mol.Biol., 222, 1991
182D	DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN Descriptor: DNA (5'-D(*TP*GP*AP*TP*CP*A)-3'), NOGALAMYCIN Authors: Smith, C.K, Davies, G.J, Dodson, E.J, Moore, M.H. Deposit date: 1994-07-28 Release date: 1994-11-30 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: DNA-nogalamycin interactions: the crystal structure of d(TGATCA) complexed with nogalamycin. Biochemistry, 34, 1995
8T1U	Crystal structure of the DRM2-CTA DNA complex Descriptor: DNA (5'-D(P*AP*TP*TP*AP*TP*TP*AP*AP*TP*(C49)P*TP*AP*AP*AP*TP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*AP*TP*TP*TP*AP*GP*AP*TP*TP*AP*AP*TP*AP*AP*T)-3'), DNA (cytosine-5)-methyltransferase DRM2, ... Authors: Chen, J, Lu, J, Song, J. Deposit date: 2023-06-03 Release date: 2023-11-22 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.91 Å) Cite: DNA conformational dynamics in the context-dependent non-CG CHH methylation by plant methyltransferase DRM2. J.Biol.Chem., 299, 2023
6GDR	DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases Descriptor: ADENOSINE MONOPHOSPHATE, DNA, DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), ... Authors: Williamson, A, Grigic, M, Leiros, H.K.S. Deposit date: 2018-04-24 Release date: 2018-07-25 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.33 Å) Cite: DNA binding with a minimal scaffold: structure-function analysis of Lig E DNA ligases. Nucleic Acids Res., 46, 2018
104D	DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN Descriptor: DNA/RNA (5'-R(*CP*GP*CP*G)-D(P*TP*AP*TP*AP*CP*GP*CP*G)-3') Authors: Zhu, L, Salazar, M, Reid, B.R. Deposit date: 1994-12-16 Release date: 1995-03-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: DNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2. Biochemistry, 34, 1995
1DA9	ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL Descriptor: DNA (5'-D(*TP*GP*GP*CP*CP*A)-3'), DOXORUBICIN Authors: Leonard, G.A, Hambley, T.W, McAuley-Hecht, K, Brown, T, Hunter, W.N. Deposit date: 1993-01-21 Release date: 1993-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes. Acta Crystallogr.,Sect.D, 49, 1993

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