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PDB: 51964 results

1J3E
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Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA
Descriptor: 5'-D(*AP*AP*GP*GP*(6MA)P*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*GP*CP*CP*TP*T)-3', SeqA protein
Authors:Fujikawa, N, Kurumizaka, H, Nureki, O, Tanaka, Y, Yamazoe, M, Hiraga, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-01-24
Release date:2004-05-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein
Nucleic Acids Res., 32, 2004
6SMW
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BU of 6smw by Molmil
A. thaliana serine hydroxymethyltransferase isoform 2 (AtSHMT2) in complex with pemetrexed
Descriptor: 1,2-ETHANEDIOL, 2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Ruszkowski, M, Sekula, B, Dauter, Z.
Deposit date:2019-08-23
Release date:2020-01-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural basis of methotrexate and pemetrexed action on serine hydroxymethyltransferases revealed using plant models.
Sci Rep, 9, 2019
6JHJ
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BU of 6jhj by Molmil
Structure of Marine bacterial laminarinase mutant-E135A
Descriptor: CALCIUM ION, LamCAT
Authors:Yang, J, Xu, Y, Miyakawa, T, Tanokura, M, Long, L.
Deposit date:2019-02-18
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Molecular Basis for Substrate Recognition and Catalysis by a Marine Bacterial Laminarinase.
Appl.Environ.Microbiol., 86, 2020
4ORZ
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BU of 4orz by Molmil
HIV-1 Nef protein in complex with single domain antibody sdAb19 and an engineered Hck SH3 domain
Descriptor: Protein Nef, Tyrosine-protein kinase HCK, single domain antibody sdAb19
Authors:Geyer, M, Lulf, S.
Deposit date:2014-02-12
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the inhibition of HIV-1 Nef by a high-affinity binding single-domain antibody.
Retrovirology, 11, 2014
4J34
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BU of 4j34 by Molmil
Crystal Structure of kynurenine 3-monooxygenase - truncated at position 394 plus HIS tag cleaved.
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Kynurenine 3-monooxygenase
Authors:Amaral, M, Levy, C, Heyes, D.J, Lafite, P, Outeiro, T.F, Giorgini, F, Leys, D, Scrutton, N.S.
Deposit date:2013-02-05
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural basis of kynurenine 3-monooxygenase inhibition.
Nature, 496, 2013
4IX6
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BU of 4ix6 by Molmil
Crystal structure of a Stt7 homolog from Micromonas algae soaked with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, MsStt7d protein
Authors:Guo, J, Wei, X, Li, M, Pan, X, Chang, W, Liu, Z.
Deposit date:2013-01-24
Release date:2013-10-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the catalytic domain of a state transition kinase homolog from Micromonas algae
Protein Cell, 4, 2013
3PZD
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BU of 3pzd by Molmil
Structure of the myosin X MyTH4-FERM/DCC complex
Descriptor: GLYCEROL, Myosin-X, Netrin receptor DCC
Authors:Wei, Z, Yan, J, Pan, L, Zhang, M.
Deposit date:2010-12-14
Release date:2011-02-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Cargo recognition mechanism of myosin X revealed by the structure of its tail MyTH4-FERM tandem in complex with the DCC P3 domain
Proc.Natl.Acad.Sci.USA, 108, 2011
3FDW
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BU of 3fdw by Molmil
Crystal structure of a C2 domain from human synaptotagmin-like protein 4
Descriptor: Synaptotagmin-like protein 4
Authors:Bonanno, J.B, Rutter, M, Bain, K.T, Miller, S, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-11-26
Release date:2008-12-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a C2 domain from human synaptotagmin-like protein 4
To be Published
6SO5
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BU of 6so5 by Molmil
Homo sapiens WRB/CAML heterotetramer in complex with a TRC40 dimer
Descriptor: ATPase ASNA1, Calcium signal-modulating cyclophilin ligand, Tail-anchored protein insertion receptor WRB, ...
Authors:McDowell, M.A, Heimes, M, Wild, K, Flemming, D, Sinning, I.
Deposit date:2019-08-29
Release date:2020-09-09
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural Basis of Tail-Anchored Membrane Protein Biogenesis by the GET Insertase Complex.
Mol.Cell, 80, 2020
4OUU
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BU of 4ouu by Molmil
anti-MT1-MMP monoclonal antibody
Descriptor: anti_MT1-MMP Heavy chain, anti_MT1-MMP light chain
Authors:Udi, Y, Grossman, M, Solomonov, I, Dym, O, Rozenberg, H, Koziol, A, Cuniasse, P, Dive, V, Arroyo, A.G, Irit, S, Israel Structural Proteomics Center (ISPC)
Deposit date:2014-02-19
Release date:2014-12-17
Last modified:2015-01-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Inhibition mechanism of membrane metalloprotease by an exosite-swiveling conformational antibody.
Structure, 23, 2015
6SOX
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BU of 6sox by Molmil
Crystal structure of cAMP-dependent protein kinase A (CHO PKA) in complex with 4-carbamoylbenzoic acid
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-aminocarbonylbenzoic acid, DIMETHYL SULFOXIDE, ...
Authors:Oebbeke, M, Siefker, C, Heine, A, Klebe, G.
Deposit date:2019-08-30
Release date:2020-09-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts.
Angew.Chem.Int.Ed.Engl., 60, 2021
3EW7
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BU of 3ew7 by Molmil
Crystal structure of the Lmo0794 protein from Listeria monocytogenes. Northeast Structural Genomics Consortium target LmR162.
Descriptor: Lmo0794 protein
Authors:Vorobiev, S.M, Abashidze, M, Seetharaman, J, Wang, D, Foote, E.L, Ciccosanti, C, Janjua, H, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-10-14
Release date:2008-11-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal structure of the Lmo0794 protein from Listeria monocytogenes.
To be Published
6SIQ
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BU of 6siq by Molmil
Fragment AZ-012 binding at the p53pT387/14-3-3 sigma interface
Descriptor: 14-3-3 protein sigma, 4-chloranyl-7-propan-2-yloxy-1-benzothiophene-2-carboximidamide, CHLORIDE ION, ...
Authors:Leysen, S, Wolter, M, Guillory, X, Genet, S, Somsen, B, Patel, J, Castaldi, P, Ottmann, C.
Deposit date:2019-08-10
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.60121 Å)
Cite:Fragment-based Differential Targeting of PPI Stabilizer Interfaces.
J.Med.Chem., 63, 2020
1IXK
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BU of 1ixk by Molmil
Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii
Descriptor: Methyltransferase
Authors:Ishikawa, I, Sakai, N, Yao, M, Watanabe, N, Tamura, T, Tanaka, I.
Deposit date:2002-06-25
Release date:2003-09-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human p120 homologue protein PH1374 from Pyrococcus horikoshii
PROTEINS: STRUCT.,FUNCT.,GENET., 54, 2004
3FER
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BU of 3fer by Molmil
Crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.
Descriptor: ACETIC ACID, Filamin-B
Authors:Kuzin, A.P, Abashidze, M, Seetharaman, R, Shastry, R, Sahdev, S, Ciccosanti, C, Xiao, R, Everett, J.K, Huang, Y, Acton, T, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-11-30
Release date:2009-01-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.
To be Published
6F10
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BU of 6f10 by Molmil
GLIC mutant D88N
Descriptor: ACETATE ION, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Hu, H.D, Delarue, M.
Deposit date:2017-11-21
Release date:2018-01-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Full mutational mapping of titratable residues helps to identify proton-sensors involved in the control of channel gating in the Gloeobacter violaceus pentameric ligand-gated ion channel.
PLoS Biol., 15, 2017
6SJF
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BU of 6sjf by Molmil
Cryo-EM structure of the RecBCD Chi unrecognised complex
Descriptor: Forked DNA substrate, RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ...
Authors:Cheng, K, Wilkinson, M, Wigley, D.B.
Deposit date:2019-08-13
Release date:2020-01-01
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair.
Nat.Struct.Mol.Biol., 27, 2020
4OU7
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BU of 4ou7 by Molmil
Crystal structure of DnaT84-153-dT10 ssDNA complex reveals a novel single-stranded DNA binding mode
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Primosomal protein 1
Authors:Liu, Z, Chen, P, Niu, L, Teng, M, Li, X.
Deposit date:2014-02-15
Release date:2014-08-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Crystal structure of DnaT84-153-dT10 ssDNA complex reveals a novel single-stranded DNA binding mode.
Nucleic Acids Res., 42, 2014
1IY0
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BU of 1iy0 by Molmil
Crystal structure of the FtsH ATPase domain with AMP-PNP from Thermus thermophilus
Descriptor: ATP-dependent metalloprotease FtsH, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Niwa, H, Tsuchiya, D, Makyio, H, Yoshida, M, Morikawa, K.
Deposit date:2002-07-10
Release date:2002-11-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Hexameric ring structure of the ATPase domain of the membrane-integrated metalloprotease FtsH from Thermus thermophilus HB8
Structure, 10, 2002
4IZK
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BU of 4izk by Molmil
Crystal structure of yellowtail ascites virus VP4 protease active site mutant (K674A) reveals both an acyl-enzyme complex and an empty active site
Descriptor: BETA-MERCAPTOETHANOL, MAGNESIUM ION, Yellowtail Ascites Virus (YAV) VP4 protease
Authors:Paetzel, M, Chung, I.Y.W.
Deposit date:2013-01-30
Release date:2013-02-27
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of Yellowtail Ascites Virus VP4 Protease: TRAPPING AN INTERNAL CLEAVAGE SITE TRANS ACYL-ENZYME COMPLEX IN A NATIVE SER/LYS DYAD ACTIVE SITE.
J.Biol.Chem., 288, 2013
4OBZ
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BU of 4obz by Molmil
Structure of Cathepsin D with inhibitor 2-(3,4-dimethoxyphenyl)-N-[N-(4-methylbenzyl)carbamimidoyl]acetamide
Descriptor: 2-(3,4-dimethoxyphenyl)-N-[N-(4-methylbenzyl)carbamimidoyl]acetamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Graedler, U, Czodrowski, P, Tsaklakidis, C, Klein, M, Maskos, K, Leuthner, B.
Deposit date:2014-01-08
Release date:2014-08-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-based optimization of non-peptidic Cathepsin D inhibitors.
Bioorg.Med.Chem.Lett., 24, 2014
3Q27
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BU of 3q27 by Molmil
Cyrstal structure of human alpha-synuclein (32-57) fused to maltose binding protein (MBP)
Descriptor: GLYCEROL, Maltose-binding periplasmic protein/alpha-synuclein chimeric protein, SULFATE ION, ...
Authors:Zhao, M, Sawaya, M.R, Cascio, D, Eisenberg, D.
Deposit date:2010-12-19
Release date:2011-06-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Structures of segments of alpha-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation
Protein Sci., 20, 2011
4IUL
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BU of 4iul by Molmil
MIF4G domain of DAP5
Descriptor: Eukaryotic translation initiation factor 4 gamma 2, SULFATE ION
Authors:Frank, F, Virgili, G, Feoktistova, K, Sawicki, M, Sonenberg, N, Fraser, C, Nagar, B.
Deposit date:2013-01-21
Release date:2013-03-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Analysis of the DAP5 MIF4G Domain and Its Interaction with eIF4A.
Structure, 21, 2013
4OVK
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BU of 4ovk by Molmil
Crystal structure of periplasmic solute binding protein from Veillonella parvula DSM 2008
Descriptor: Periplasmic binding protein, TRIETHYLENE GLYCOL
Authors:Chang, C, Chhor, G, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-11-15
Release date:2013-12-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of periplasmic solute binding protein from Veillonella parvula DSM 2008
To be published
6SBC
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BU of 6sbc by Molmil
Structure of type II terpene cyclase MstE from Scytonema in complex with farnesyl dihydroxybenzoate
Descriptor: CHLORIDE ION, MstE, SODIUM ION, ...
Authors:Moosmann, P, Ecker, F, Leopold-Messer, S, Cahn, J.K.B, Groll, M, Piel, J.
Deposit date:2019-07-19
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A monodomain class II terpene cyclase assembles complex isoprenoid scaffolds.
Nat.Chem., 12, 2020

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