Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6LGX
DownloadVisualize
BU of 6lgx by Molmil
Structure of Rabies virus glycoprotein at basic pH
Descriptor: Glycoprotein,Glycoprotein,Glycoprotein
Authors:Yang, F.L, Lin, S, Ye, F, Yang, J, Qi, J.X, Chen, Z.J, Lin, X, Wang, J.C, Yue, D, Cheng, Y.W, Chen, Z.M, Chen, H, You, Y, Zhang, Z.L, Yang, Y, Yang, M, Sun, H.L, Li, Y.H, Cao, Y, Yang, S.Y, Wei, Y.Q, Gao, G.F, Lu, G.W.
Deposit date:2019-12-06
Release date:2020-02-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.097 Å)
Cite:Structural Analysis of Rabies Virus Glycoprotein Reveals pH-Dependent Conformational Changes and Interactions with a Neutralizing Antibody.
Cell Host Microbe, 27, 2020
4GY5
DownloadVisualize
BU of 4gy5 by Molmil
Crystal structure of the tandem tudor domain and plant homeodomain of UHRF1 with Histone H3K9me3
Descriptor: E3 ubiquitin-protein ligase UHRF1, Peptide from Histone H3.3, ZINC ION
Authors:Cheng, J, Yang, Y, Fang, J, Xiao, J, Zhu, T, Chen, F, Wang, P, Xu, Y.
Deposit date:2012-09-05
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.956 Å)
Cite:Structural insight into coordinated recognition of trimethylated histone H3 lysine 9 (H3K9me3) by the plant homeodomain (PHD) and tandem tudor domain (TTD) of UHRF1 (ubiquitin-like, containing PHD and RING finger domains, 1) protein
J.Biol.Chem., 288, 2013
1MQ8
DownloadVisualize
BU of 1mq8 by Molmil
Crystal structure of alphaL I domain in complex with ICAM-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin alpha-L, ...
Authors:Shimaoka, M, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, McCormack, A, Zhang, R, Joachimiak, A, Takagi, J, Wang, J.-H, Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
6XV2
DownloadVisualize
BU of 6xv2 by Molmil
Full structure of RYMV P1 protein, derived from crystallographic and NMR data.
Descriptor: ZINC ION, p1
Authors:Poignavent, V, Hoh, F, Vignols, F, Demene, H, Yang, Y, Gillet, F.X.
Deposit date:2020-01-21
Release date:2021-02-03
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:A Flexible and Original Architecture of Two Unrelated Zinc Fingers Underlies the Role of the Multitask P1 in RYMV Spread.
J.Mol.Biol., 434, 2022
6X4X
DownloadVisualize
BU of 6x4x by Molmil
B24Y DKP insulin
Descriptor: Insulin, Insulin chain A
Authors:Weiss, M.A, Yang, Y.
Deposit date:2020-05-24
Release date:2020-08-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Evolution of insulin at the edge of foldability and its medical implications.
Proc.Natl.Acad.Sci.USA, 117, 2020
6XQB
DownloadVisualize
BU of 6xqb by Molmil
SARS-CoV-2 RdRp/RNA complex
Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
Authors:Liu, B, Shi, W, Yang, Y.
Deposit date:2020-07-09
Release date:2020-07-29
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of SARS-CoV-2 RdRp/RNA complex at 3.4 Angstroms resolution
To Be Published
1MQA
DownloadVisualize
BU of 1mqa by Molmil
Crystal structure of high affinity alphaL I domain in the absence of ligand or metal
Descriptor: Integrin alpha-L
Authors:Shimaoka, T, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, Zhang, R, Takagi, J, Wang, J.-H, Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
1MQ9
DownloadVisualize
BU of 1mq9 by Molmil
Crystal structure of high affinity alphaL I domain with ligand mimetic crystal contact
Descriptor: Integrin alpha-L, MANGANESE (II) ION
Authors:Shimaoka, M, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, McCormack, A, Zhang, R, Joachimiak, A, Takagi, J, Wang, J.-H, Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
3TCL
DownloadVisualize
BU of 3tcl by Molmil
Crystal Structure of HIV-1 Neutralizing Antibody CH04
Descriptor: CH04 Heavy Chain Fab, CH04 Light Chain Fab, IMIDAZOLE
Authors:Louder, R.K, McLellan, J.S, Pancera, M, Yang, Y, Zhang, B, Bonsignori, M, Kwong, P.D.
Deposit date:2011-08-09
Release date:2011-11-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.906 Å)
Cite:Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9.
Nature, 480, 2011
7Y8M
DownloadVisualize
BU of 7y8m by Molmil
Structure of ScIRED-R2-V3 from Streptomyces clavuligerus in complex with 5-(3-fluorophenyl)-3,4-dihydro-2H-pyrrole
Descriptor: 2-[2,5-bis(fluoranyl)phenyl]pyrrolidine, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, reductase
Authors:Zhang, L.L, Liu, W.D, Shi, M, Huang, J.W, Yang, Y, Chen, C.C, Guo, R.T.
Deposit date:2022-06-24
Release date:2023-06-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Engineered Imine Reductase for Larotrectinib Intermediate Manufacture
Acs Catalysis, 12, 2022
8K5I
DownloadVisualize
BU of 8k5i by Molmil
The structure of SenA in complex with N,N,N-trimethyl-histidine and thioglucose
Descriptor: 1-thio-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
Authors:Liu, M, Yang, Y, Huang, J.-W, Chen, C.-C, Guo, R.-T.
Deposit date:2023-07-21
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural insights into a novel nonheme iron-dependent oxygenase in selenoneine biosynthesis.
Int.J.Biol.Macromol., 256, 2023
8K5J
DownloadVisualize
BU of 8k5j by Molmil
The structure of SenA in complex with N,N,N-trimethyl-histidine
Descriptor: FE (III) ION, GLYCEROL, N,N,N-trimethyl-histidine, ...
Authors:Liu, M, Yang, Y, Huang, J.-W, Chen, C.-C, Guo, R.-T.
Deposit date:2023-07-21
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural insights into a novel nonheme iron-dependent oxygenase in selenoneine biosynthesis.
Int.J.Biol.Macromol., 256, 2023
4GKG
DownloadVisualize
BU of 4gkg by Molmil
Crystal structure of the S-Helix Linker
Descriptor: C4-dicarboxylate transport sensor protein dctB, PHOSPHATE ION
Authors:Liu, J.W, Lu, D, Sun, Y.J, Wen, J, Yang, Y, Yang, J.G, Wei, X.L, Zhang, X.D, Wang, Y.P.
Deposit date:2012-08-11
Release date:2013-08-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.695 Å)
Cite:Crystal structure of the S-Helix Linker
To be Published
5LQ6
DownloadVisualize
BU of 5lq6 by Molmil
Salmonella effector SpvD - R161 variant
Descriptor: SODIUM ION, Virulence protein vsdE
Authors:Zhang, Y, Grabe, G.J, Rolhion, N, Yang, Y, Holden, D.W, Hare, S.A.
Deposit date:2016-08-16
Release date:2016-11-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:The Salmonella Effector SpvD Is a Cysteine Hydrolase with a Serovar-specific Polymorphism Influencing Catalytic Activity, Suppression of Immune Responses, and Bacterial Virulence.
J. Biol. Chem., 291, 2016
8GAP
DownloadVisualize
BU of 8gap by Molmil
Structure of LARP7 protein p65-telomerase RNA complex in telomerase
Descriptor: Telomerase La-related protein p65, Telomerase RNA, Telomerase associated protein p50, ...
Authors:Wang, Y, He, Y, Wang, Y, Yang, Y, Singh, M, Eichhorn, C.D, Zhou, Z.H, Feigon, J.
Deposit date:2023-02-23
Release date:2023-06-28
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of LARP7 Protein p65-telomerase RNA Complex in Telomerase Revealed by Cryo-EM and NMR.
J.Mol.Biol., 435, 2023
1G47
DownloadVisualize
BU of 1g47 by Molmil
1ST LIM DOMAIN OF PINCH PROTEIN
Descriptor: PINCH PROTEIN, ZINC ION
Authors:Velyvis, A, Yang, Y, Wu, C, Qin, J.
Deposit date:2000-10-26
Release date:2001-02-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the focal adhesion adaptor PINCH LIM1 domain and characterization of its interaction with the integrin-linked kinase ankyrin repeat domain.
J.Biol.Chem., 276, 2001
3NAF
DownloadVisualize
BU of 3naf by Molmil
Structure of the Intracellular Gating Ring from the Human High-conductance Ca2+ gated K+ Channel (BK Channel)
Descriptor: Calcium-activated potassium channel subunit alpha-1,Calcium-activated potassium channel subunit alpha-1,Calcium-activated potassium channel subunit alpha-1
Authors:Wu, Y, Yang, Y, Ye, S, Jiang, Y.
Deposit date:2010-06-01
Release date:2010-06-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of the gating ring from the human large-conductance Ca(2+)-gated K(+) channel.
Nature, 466, 2010
1NFG
DownloadVisualize
BU of 1nfg by Molmil
Structure of D-hydantoinase
Descriptor: D-hydantoinase, ZINC ION
Authors:Xu, Z, Yang, Y, Jiang, W, Arnold, E, Ding, J.
Deposit date:2002-12-14
Release date:2003-07-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of D-Hydantoinase from Burkholderia pickettii at a Resolution of 2.7 Angstroms: Insights into the Molecular Basis of Enzyme Thermostability.
J.Bacteriol., 185, 2003
5DAY
DownloadVisualize
BU of 5day by Molmil
The structure of NAP1-Related Protein(NRP1) in Arabidopsis
Descriptor: CALCIUM ION, NAP1-related protein 1
Authors:Zhu, Y, Rong, L, Yang, Y, Zhang, C, Feng, H.Y, Zheng, L.N, Shen, W.H, Ma, J.B, Dong, A.W.
Deposit date:2015-08-20
Release date:2016-09-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.329 Å)
Cite:The structure of NAP1-Related Protein(NRP1) in Arabidopsis
To Be Published
3RSN
DownloadVisualize
BU of 3rsn by Molmil
Crystal Structure of the N-terminal region of Human Ash2L
Descriptor: Set1/Ash2 histone methyltransferase complex subunit ASH2, ZINC ION
Authors:Chen, Y, Wan, B, Wang, K.C, Cao, F, Yang, Y, Protacio, A, Dou, Y, Chang, H.Y, Lei, M.
Deposit date:2011-05-02
Release date:2011-06-22
Last modified:2011-12-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding.
Embo Rep., 12, 2011
5E1J
DownloadVisualize
BU of 5e1j by Molmil
Structure of voltage-gated two-pore channel TPC1 from Arabidopsis thaliana
Descriptor: BARIUM ION, CALCIUM ION, Two pore calcium channel protein 1
Authors:Guo, J, Zeng, W, Chen, Q, Lee, C, Chen, L, Yang, Y, Jiang, Y.
Deposit date:2015-09-29
Release date:2015-12-16
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.308 Å)
Cite:Structure of the voltage-gated two-pore channel TPC1 from Arabidopsis thaliana.
Nature, 531, 2016
3OWT
DownloadVisualize
BU of 3owt by Molmil
Crystal structure of S. cerevisiae RAP1-Sir3 complex
Descriptor: DNA-binding protein RAP1, Regulatory protein SIR3
Authors:Chen, Y, Yang, Y, Lei, M.
Deposit date:2010-09-20
Release date:2011-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms.
Nat.Struct.Mol.Biol., 18, 2011
8SG2
DownloadVisualize
BU of 8sg2 by Molmil
BIVALENT INTERACTIONS OF PIN1 WITH THE C-TERMINAL TAIL OF PKC
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, Protein kinase C beta type
Authors:Dixit, K, Yang, Y, Chen, X.R, Igumenova, T.I.
Deposit date:2023-04-11
Release date:2024-05-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A novel bivalent interaction mode underlies a non-catalytic mechanism for Pin1-mediated protein kinase C regulation.
Elife, 13, 2024
2EEM
DownloadVisualize
BU of 2eem by Molmil
Solution structure of the synthetic mytilin
Descriptor: Mytilin-B
Authors:Roch, P, Yang, Y, Aumelas, A.
Deposit date:2007-02-16
Release date:2007-10-09
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:NMR structure of mussel mytilin, and antiviral-antibacterial activities of derived synthetic peptides.
Dev.Comp.Immunol., 32, 2008
5WTA
DownloadVisualize
BU of 5wta by Molmil
Crystal Structure of Staphylococcus aureus SdrE apo form
Descriptor: Serine-aspartate repeat-containing protein E
Authors:Wu, M, Zhang, Y, Hang, T, Wang, C, Yang, Y, Zang, J, Zhang, M, Zhang, X.
Deposit date:2016-12-10
Release date:2017-07-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Staphylococcus aureus SdrE captures complement factor H's C-terminus via a novel 'close, dock, lock and latch' mechanism for complement evasion
Biochem. J., 474, 2017

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon