[English] 日本語
Yorodumi
- PDB-6pxa: The crystal structure of chloramphenicol acetyltransferase-like p... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 6pxa
TitleThe crystal structure of chloramphenicol acetyltransferase-like protein from Vibrio fischeri ES114 in complex with taurocholic acid
ComponentsChloramphenicol acetyltransferase
KeywordsTRANSFERASE / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID
Function / homology
Function and homology information


chloramphenicol O-acetyltransferase / chloramphenicol O-acetyltransferase activity
Similarity search - Function
Hexapeptide transferase, conserved site / Hexapeptide-repeat containing-transferases signature. / Hexapeptide repeat proteins / UDP N-Acetylglucosamine Acyltransferase; domain 1 / Hexapeptide repeat / Bacterial transferase hexapeptide (six repeats) / Trimeric LpxA-like superfamily / 3 Solenoid / Mainly Beta
Similarity search - Domain/homology
ACETATE ION / FORMIC ACID / TAUROCHOLIC ACID / Chloramphenicol acetyltransferase
Similarity search - Component
Biological speciesAliivibrio fischeri (bacteria)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.82 Å
AuthorsTan, K. / Maltseva, N. / Jedrzejczak, R. / Kuhn, M. / Joachimiak, A. / Center for Structural Genomics of Infectious Diseases (CSGID)
Funding support United States, 1items
OrganizationGrant numberCountry
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)HHSN272201700060C United States
CitationJournal: To Be Published
Title: The crystal structure of chloramphenicol acetyltransferase-like protein from Vibrio fischeri ES114 in complex with taurocholic acid
Authors: Tan, K. / Maltseva, N. / Jedrzejczak, R. / Kuhn, M. / Joachimiak, A.
History
DepositionJul 25, 2019Deposition site: RCSB / Processing site: RCSB
Revision 1.0Sep 25, 2019Provider: repository / Type: Initial release
Revision 1.1Dec 18, 2019Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
Revision 1.2Oct 11, 2023Group: Data collection / Database references / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: Chloramphenicol acetyltransferase
B: Chloramphenicol acetyltransferase
C: Chloramphenicol acetyltransferase
D: Chloramphenicol acetyltransferase
E: Chloramphenicol acetyltransferase
F: Chloramphenicol acetyltransferase
G: Chloramphenicol acetyltransferase
H: Chloramphenicol acetyltransferase
I: Chloramphenicol acetyltransferase
J: Chloramphenicol acetyltransferase
K: Chloramphenicol acetyltransferase
L: Chloramphenicol acetyltransferase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)305,23561
Polymers296,95112
Non-polymers8,28449
Water13,980776
1
A: Chloramphenicol acetyltransferase
B: Chloramphenicol acetyltransferase
C: Chloramphenicol acetyltransferase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)76,29014
Polymers74,2383
Non-polymers2,05211
Water543
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area14630 Å2
ΔGint-122 kcal/mol
Surface area26880 Å2
MethodPISA
2
D: Chloramphenicol acetyltransferase
E: Chloramphenicol acetyltransferase
F: Chloramphenicol acetyltransferase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)76,20313
Polymers74,2383
Non-polymers1,96510
Water543
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area14100 Å2
ΔGint-98 kcal/mol
Surface area26760 Å2
MethodPISA
3
G: Chloramphenicol acetyltransferase
H: Chloramphenicol acetyltransferase
I: Chloramphenicol acetyltransferase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)76,26614
Polymers74,2383
Non-polymers2,02811
Water543
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area14600 Å2
ΔGint-128 kcal/mol
Surface area27040 Å2
MethodPISA
4
J: Chloramphenicol acetyltransferase
K: Chloramphenicol acetyltransferase
L: Chloramphenicol acetyltransferase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)76,47620
Polymers74,2383
Non-polymers2,23917
Water543
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area15410 Å2
ΔGint-157 kcal/mol
Surface area26560 Å2
MethodPISA
Unit cell
Length a, b, c (Å)43.519, 121.363, 146.170
Angle α, β, γ (deg.)89.399, 89.911, 87.602
Int Tables number1
Space group name H-MP1
Space group name HallP1
Symmetry operation#1: x,y,z

-
Components

-
Protein , 1 types, 12 molecules ABCDEFGHIJKL

#1: Protein
Chloramphenicol acetyltransferase /


Mass: 24745.918 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Aliivibrio fischeri (strain ATCC 700601 / ES114) (bacteria)
Strain: ATCC 700601 / ES114 / Gene: VF_A0790 / Plasmid: pMCSG53 / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / Variant (production host): -Magic
References: UniProt: Q5DZD6, chloramphenicol O-acetyltransferase

-
Non-polymers , 7 types, 825 molecules

#2: Chemical
ChemComp-TCH / TAUROCHOLIC ACID / Taurocholic acid


Mass: 515.703 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C26H45NO7S / Feature type: SUBJECT OF INVESTIGATION
#3: Chemical
ChemComp-CL / CHLORIDE ION / Chloride


Mass: 35.453 Da / Num. of mol.: 16 / Source method: obtained synthetically / Formula: Cl
#4: Chemical
ChemComp-SO4 / SULFATE ION / Sulfate


Mass: 96.063 Da / Num. of mol.: 4 / Source method: isolated from a natural source / Formula: SO4
#5: Chemical ChemComp-ACT / ACETATE ION / Acetate


Mass: 59.044 Da / Num. of mol.: 3 / Source method: obtained synthetically / Formula: C2H3O2
#6: Chemical
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / Glycerol


Mass: 92.094 Da / Num. of mol.: 7 / Source method: obtained synthetically / Formula: C3H8O3
#7: Chemical
ChemComp-FMT / FORMIC ACID / Formic acid


Mass: 46.025 Da / Num. of mol.: 7 / Source method: obtained synthetically / Formula: CH2O2
#8: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 776 / Source method: isolated from a natural source / Formula: H2O

-
Details

Has ligand of interestY

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.62 Å3/Da / Density % sol: 53.12 %
Crystal growTemperature: 289 K / Method: vapor diffusion, sitting drop / pH: 8.5
Details: 0.2 M Sodium acetate, 0.1 M Tris, 16% (w/v) PEG4000

-
Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 19-ID / Wavelength: 0.9789 Å
DetectorType: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: Mar 19, 2019 / Details: mirror
RadiationMonochromator: Si 111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9789 Å / Relative weight: 1
ReflectionResolution: 1.82→46.9 Å / Num. obs: 257772 / % possible obs: 96.3 % / Observed criterion σ(I): -3 / Redundancy: 3.4 % / Biso Wilson estimate: 33.74 Å2 / CC1/2: 0.987 / Rmerge(I) obs: 0.084 / Rpim(I) all: 0.053 / Rrim(I) all: 0.1 / Χ2: 2.052 / Net I/σ(I): 25.3
Reflection shellResolution: 1.82→1.84 Å / Redundancy: 3.2 % / Rmerge(I) obs: 0.718 / Mean I/σ(I) obs: 1.4 / Num. unique obs: 9761 / CC1/2: 0.783 / Rpim(I) all: 0.447 / Rrim(I) all: 0.85 / Χ2: 0.829 / % possible all: 92

-
Processing

Software
NameVersionClassification
SBC-Collectdata collection
PHENIX1.15.2_3472refinement
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 5UX9
Resolution: 1.82→46.9 Å / SU ML: 0.2505 / Cross valid method: FREE R-VALUE / σ(F): 1.96 / Phase error: 30.7683
RfactorNum. reflection% reflectionSelection details
Rfree0.2377 12605 4.9 %random
Rwork0.1974 ---
obs0.1993 257109 95.97 %-
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å
Displacement parametersBiso mean: 50.99 Å2
Refinement stepCycle: LAST / Resolution: 1.82→46.9 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms20682 0 531 776 21989
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.008921805
X-RAY DIFFRACTIONf_angle_d1.006229595
X-RAY DIFFRACTIONf_chiral_restr0.06393147
X-RAY DIFFRACTIONf_plane_restr0.0063745
X-RAY DIFFRACTIONf_dihedral_angle_d16.291612372
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
1.82-1.840.42463360.36687250X-RAY DIFFRACTION85.68
1.84-1.860.36663960.34777935X-RAY DIFFRACTION93.85
1.86-1.890.35914050.3328238X-RAY DIFFRACTION95.78
1.89-1.910.33364210.38131X-RAY DIFFRACTION95.67
1.91-1.930.3683790.29867768X-RAY DIFFRACTION92.16
1.93-1.960.32944290.28358292X-RAY DIFFRACTION96.91
1.96-1.990.2844430.26658352X-RAY DIFFRACTION97.85
1.99-2.020.3244480.26688199X-RAY DIFFRACTION97.96
2.02-2.050.30754380.25738338X-RAY DIFFRACTION97.77
2.05-2.080.29054740.25498287X-RAY DIFFRACTION97.81
2.08-2.120.30174090.24398323X-RAY DIFFRACTION97.76
2.12-2.160.27924390.23488259X-RAY DIFFRACTION97.71
2.16-2.20.29144540.23438243X-RAY DIFFRACTION97.73
2.2-2.240.29814350.22788312X-RAY DIFFRACTION97.45
2.24-2.290.28954360.22028331X-RAY DIFFRACTION97.34
2.29-2.350.25294110.2137832X-RAY DIFFRACTION93.82
2.35-2.40.27613970.22038429X-RAY DIFFRACTION97.95
2.4-2.470.28114190.21638285X-RAY DIFFRACTION98.02
2.47-2.540.2964150.21798406X-RAY DIFFRACTION97.88
2.54-2.620.25854130.20568264X-RAY DIFFRACTION98.06
2.62-2.720.25164420.20288440X-RAY DIFFRACTION98.22
2.72-2.830.25744640.20348226X-RAY DIFFRACTION98.5
2.83-2.960.23984450.19988310X-RAY DIFFRACTION97.77
2.96-3.110.26114050.20998174X-RAY DIFFRACTION94.82
3.11-3.310.22583720.20088308X-RAY DIFFRACTION98.3
3.31-3.560.22015130.19058214X-RAY DIFFRACTION97.63
3.56-3.920.21534190.17538175X-RAY DIFFRACTION96.05
3.92-4.490.19023240.15427359X-RAY DIFFRACTION86.29
4.49-5.650.17864290.14737647X-RAY DIFFRACTION90.52
5.65-46.90.18353950.16588177X-RAY DIFFRACTION95.84
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.55200261520.09704967863161.267613643373.79502892540.5284615783098.13477666351-0.0829866020385-0.106084481650.382889876286-0.065010456195-0.0295501602720.433069361521-0.3953991574-0.6734450039190.1277654832640.4959230089530.0565249655222-0.05191336365090.3412413129390.07046556395240.433370473378-11.504340715516.9539591614-4.57703726169
28.897046442282.5069749189-1.783131014092.88368812098-2.952604595794.251587688620.219760640405-0.9987914703760.6183647606290.818080684673-0.03895146294570.305231207351-0.571601220494-0.396890032159-0.2047606595730.6226905049480.09298354329980.03791002561020.423709650888-0.03432982807420.475197577855-9.777786565216.726482232811.6530239829
30.988810303394-0.2537997629321.251916939152.55608506901-1.337015830586.17462721537-0.0460888943713-0.1431813547050.1939072828920.394486940927-0.03328277684970.0776782829194-0.268270570166-0.151771915250.1014803601240.499524368993-0.0242907781197-0.0230231970710.3190618573760.01632650286130.2973549341351.1122601900112.585073226211.501566189
41.628955047410.222778438496-0.2454973035163.42718460544-1.807821663072.97693157308-0.03724926181390.009431747407920.1207775830020.00474596249931-0.0612545315705-0.218464003174-0.2086016405720.06666593059020.09771577517320.546013164218-0.0409452652529-0.0399854226830.2856200968440.04096575790150.3195278268418.2770115052123.7016515906-12.2447032591
56.052110045180.386597861751-2.228357189572.20524061884-1.747568983733.967617202150.3651864655970.135303672344-0.1470897764140.03295479112490.0409440875561.512704052230.406519529467-0.67475059402-0.2980055657930.6084111002650.00101174079642-0.0341268877510.3742231076790.002732589061470.429453629803-14.63109404250.4494940144716.2447717078
61.189359214650.863201602274-0.2795747699112.824814632192.157817229722.602078966740.108902404664-0.0658341394374-0.06029627076050.7769465661180.08697289397420.3659393736530.112508339306-0.00666730371762-0.2737759654920.342794481648-0.0124177732848-0.02441945583180.3516546582720.06558499720560.362044255122-8.91869111775-6.169178820815.5031238565
76.259607345043.24155050873-1.927259263276.78703231394-2.087804947256.23052182343-0.151302580044-0.248161848892-0.388692668946-0.295799832705-0.007748192770321.473819731510.512615960397-0.8581770620220.1314743955780.351433623207-0.0168126865940.03206480546340.4507192104170.06970650947160.632073424322-13.1705734675-19.20963696839.21020514608
83.158551692590.2927433090790.136147604766.499410117632.404915501213.591212533090.118276327441-0.0941288764258-0.4438279851140.735844024882-0.21807341225-0.02486749970660.612456343294-0.1537746238930.05020419602430.64785202166-0.01429748595230.01911311462320.2944702742640.08218947606940.308738128221-3.30194927081-17.482808877316.0149854588
90.6916713885520.1828645138490.358074781873.087698666251.52950810813.21450456671-0.0229032371721-0.0990422789391-0.03952481576080.319358318546-0.02545022506680.0908712287880.213971286253-0.01494690328690.0336683600060.285236392850.00704312768341-0.03867389599220.2721616076520.06935039520250.326048234582.05569185071-13.99304861015.48199335566
100.8182553556261.1698668874-0.04384225242294.743465698012.493668730342.221016186170.2374022086460.0718997672139-0.2799544425640.3502748286090.18669200752-0.5483191905070.1522026881280.77392904784-0.4079294814430.296302332704-0.0300501487269-0.08993720588940.4255307624310.07027729949860.58833642455115.2609275449-0.7310778169313.5852558714
112.003791408393.81240092102-0.2934989897334.03432072270.2210083772182.55804034873-0.237406302103-0.666215725286-0.7620949003610.610372790601-0.142273964943-0.3252148086791.061526191231.3622380550.2309824476130.7435357947620.146469897835-0.2912652162990.7095817263860.03843878518330.51660295197818.1789454516-5.3859106913927.6616656779
123.66636678738-0.306824251063-0.6258904433331.37473279517-0.8331611766557.525047024160.261496827288-0.477467638028-0.05347072331150.920138450977-0.0307410613905-0.0461684720687-0.2941300530810.124122148401-0.2079288409211.09537524815-0.0199968370994-0.1533231455890.5345262924230.01365280028520.3556014401055.72183945818-0.60676593370634.4195920948
136.38242516882-0.984083437086-1.377600568822.36410991315-2.43988831444.48559458570.0701213962584-1.09284432058-0.06665667222940.949822311553-0.308881675267-0.5956188064410.2056735038051.092354233130.2306227072171.103592359010.0400634197726-0.2783255178090.6370531980320.0527261029250.45837108445213.9050387154-2.0991741106638.7126369112
142.100910974011.15485605953-0.1357312789454.384562774570.3136536817583.32235083038-0.05543299770360.285538135017-0.211485148747-0.5431415191230.05475027622460.70409102043-0.412865432245-0.474442151333-0.1978489124270.398865505218-0.0159771926089-0.224572634260.3657909612710.07661815533540.619550988156-14.4099077195-13.2493722762-12.8301750509
152.608944192741.34637903159-0.6888043465594.674946140760.9030279353735.56641281040.0379406790056-0.07085005388820.0118607593987-0.07147945556230.2399752802710.40694747925-0.417275704158-0.48607932181-0.2137470845020.3498005325960.02822024125010.02503338995230.3183971231240.0514115079730.417143750163-12.0576210198-8.45844470518-6.29204654115
162.832415895841.18274118453-3.324746993274.70955160111-0.7220092907467.368609344740.2012069713840.8514940509060.385371148719-1.32688603410.00247175288860.7246797745582.00584132894E-5-0.799627695603-0.01661229822320.7520222846550.0171275859659-0.1780198431840.4730883590770.1011953272710.475008429991-12.73526167563.48891124584-21.8278673248
170.1965944638020.324832944541-0.09369623713574.64277566882-1.030233950220.455756197481-0.1250597257820.08893219412990.134422889111-0.8859681958610.2033582843240.123182563922-0.132212605465-0.0907363581011-0.07057729036840.572551026146-0.0124967384829-0.07516084184130.2693855286720.07343551484040.347123151822-2.648970068536.41452957028-16.5441446615
184.75713794351-3.706340759350.277759770653.35564134435-0.9605261614952.475736350670.370589597160.4782272255020.122620518275-2.63612358732-0.3041728326020.6510155835910.612880467875-0.2983128905630.04873419197120.824163076759-0.0963799228541-0.1396524059590.4177300101650.07523694807590.438588208005-1.9952285234613.3870263212-24.8453549605
192.43611490261-1.40609749427-0.02990514858234.388702038982.13989013383.95443416836-0.0672344660862-0.0005445993088-0.003970976835990.0967109062479-0.0632196504868-0.116111373340.04799819896010.09223011191370.1267011478130.492534896898-0.0150556594733-0.01314823021440.2357644398720.02909933143210.3104891845590.289579927138-8.602175994-12.3106213608
202.97328447156-1.663423697330.2040342397216.216033422932.558084762153.83117927118-0.151801601140.1043307679240.160721027248-0.5045860348140.13603535824-0.1326261740980.2808132229880.404519525793-0.03016394931610.401858107748-0.0288430253430.01890577369960.2235772419790.03581048423950.274979364126.68588552017-9.47307888607-12.1967255661
213.16194228223-0.2136248266770.1139893897495.413172100146.166429640317.797661333250.1383158214550.1232363679470.654856757944-0.3072895749020.465702364734-0.9552950528320.1533185377890.445231608905-0.5001937702490.5002002917980.0625331397068-0.02104259635930.2871874486090.03450924600040.33636877406912.7533196165-13.789616947-9.08577112913
226.547839878141.094263818313.207670027744.342509586884.109521820064.653554737280.4222157462990.816383527871-0.341003653318-1.387522255340.132045793953-0.8068068638250.1085789326470.242804665301-0.5261825818880.6518368004360.03324082382310.01308206491950.339243547602-0.0008791741487480.33892871070112.4912270869-24.0080873524-20.2318633432
237.23888754560.518894941210.8292353983285.942009393312.12769027924.213215472710.2629587550090.409303290076-0.503943304465-0.6724430267950.01449481232240.29167202360.656436293780.0115284553872-0.2647841997550.6273027303630.034801849408-0.07158584580430.212668058335-0.03421413213950.30165079634-0.447499395157-30.4622220356-18.1689448434
242.03258995342.15345511078-0.4235177293718.661688438533.059206905357.095797516060.06093475985370.129816487753-0.255936585051-0.7310582626390.335030876440.08862253953540.000983782644742-0.0264959841159-0.2946904202750.7078684405280.0590401513622-0.01233113588750.302020757661-0.02013352760730.3339449407886.86267643309-34.484738437-22.6447547602
251.557396954580.3020307688250.273112321674.005415319840.4939776074485.185080685130.0743387071953-0.02422364569920.361017614436-0.1960534815050.01162799641980.446115009977-0.431406270026-0.402588876782-0.06584599586910.5306717113410.0292888258012-0.03158837725220.2814184599280.06230657074030.437110795048-9.3878674479316.3641626776-75.7113896091
269.603127167514.669063262273.275888442072.788318718233.004456274245.961515282670.14690550268-0.9826799063191.06725206469-0.0990251869049-0.708903201261.12289000355-0.316669403542-0.862685590970.5550353782740.6712163455930.02914414419930.03795251307340.421396744198-0.1518173868080.696783596265-7.82967786317.6819453104-57.1951131344
270.8727689257020.162094171885-0.7143536710072.186697920230.1276901320691.785729922430.0140843195789-0.137058305310.09784034626950.3893464379120.02530566350590.01399859338450.198666715540.0688675277776-0.007362247591980.6539677926110.00937592023715-0.08187640101540.2589183215930.01163720350160.2966145978595.6057581501512.5747961286-65.7147858807
284.703404364211.59683544725-0.5953419730836.43261103788-2.806544620994.034247033750.0159085390060.1824947235550.547000350028-0.6168752758010.1702058287130.47878619797-0.276560354902-0.0353184590621-0.1670484087780.637695440094-0.0367162605246-0.05936655919320.2248802347540.06178314072530.4079689221228.8719202523131.8291431609-88.3666125175
292.28570284732-0.1149978214370.4182270023591.060420517030.4324236155440.424184375609-0.0114326050536-0.216693489876-0.1410362919960.3525882598660.1133117063960.726517157916-0.0406065348915-0.156584932983-0.1021701786850.671260360222-0.00129044628550.05470529330510.356017445340.03881045546450.454121853117-12.7009472984-3.16557110251-56.3102958045
302.920400046861.621920850680.5410019550995.379653235010.8250824525953.477010283160.211255352084-0.389045524353-0.05657348062630.65212686936-0.2228466432750.1493413959020.603515271694-0.117730476728-0.05279608339470.6332770713640.04187380046550.01103466262330.2688079181440.004265675280370.347809748991-5.29396067219-3.8730168796-54.9267509867
310.429593005429-0.031126785434-0.1046653639821.486940709861.63762159941.81425863536-0.0827946945936-0.1120418252690.0717536500660.8615889529610.2565380843410.2989996533480.212772840436-0.4445506195740.02000089445890.686434324281-0.01492017203130.08334976528520.3568522342990.08621224365340.48080406883-9.50869365836-11.5484894068-64.3059410282
322.317308884811.61534629166-0.5335926997826.17198394335-2.209749597944.05835642179-0.2932512766920.0738472513653-1.12988060220.4155992462620.5469330646660.146906347110.60827122434-0.648079930273-0.2285852114660.94169469726-0.0497999804360.05368692590010.3987256928480.04400078251320.673003905852-9.83676035823-25.5793216573-63.0851443945
330.393049239534-0.880942061251-0.6330458573882.211574001681.081444714673.59997470929-0.0995487251578-0.0996755069216-0.08185872443090.4375154538580.03287195628790.2220337965920.254016097221-0.06539894150240.05256206483790.534261412014-0.0305700106032-0.01413201232540.2338994927830.007434184927140.289309208859-0.0597213081682-17.724134094-70.7932441565
342.785076156462.264440128082.857091807965.992820338644.285146490293.876999510110.2175147778660.205895436531-0.3959210209560.9314550441570.4494099432470.04676559278251.183730261160.0896377049684-0.2272861149940.680464627672-0.0439399798891-0.02922849966290.3242145641920.01147869616960.3607528816430.604942756313-28.1976315491-73.1025782407
351.285482380671.333404195920.4618344606282.919708357370.5084305071753.69860977843-0.126247999398-0.201439095576-0.09075045361670.554655174880.0478906479038-0.2355511535370.0234844092410.08369123684750.05144544552920.6992102343710.0559684694081-0.08367417463190.2550650547840.01464484500130.3012754636867.93868943679-6.27803265819-59.7583410306
361.191698262160.195090379670.1115589582611.82749278018-2.078355898887.507465323280.128193844604-0.264380036274-0.2293711347351.061295648860.0756146224901-0.5321331140310.1678378054270.6947923047190.3212470490510.8460581524020.0371953299486-0.278071927120.4455543850190.04851128275440.55228203833817.7249223234-3.52730123656-51.8240519945
372.41843466673-0.426302009301-0.3564383646390.44841465997-0.320901484013.04341266773-0.0146286820004-0.674801276853-0.3507613700920.747434281724-0.03744951788650.0295343955996-0.01084527087880.3512923650450.1457901480511.562624176882.91344145078E-5-0.06697190619920.5135599938140.1139985281890.3203240594366.39927070066-1.97287245972-37.8281430206
383.350496119590.374280192076-2.850030867483.73480990126-0.5851818108114.88765139964-0.101931797848-1.125906430220.08028241348450.664362742699-0.131203780493-0.6869130022280.1901124200380.6472327615960.2642915140371.488520179590.114353732323-0.3277048829720.6237432022650.007224235847450.54834803660914.7996916146-3.61563413401-33.1514724546
396.054375780512.45977719221-3.558834349813.637026670982.973799658819.54531009419-0.2998557385480.2872985921550.640182607578-0.8118990696610.4655335393640.9353273133610.0503310923425-0.7984588137910.09901197949470.513767161855-0.0361545878659-0.05530355510350.3091525792830.0992274157260.517976217058-13.4887836207-15.4298831574-77.3371451243
409.60609865423.07106345262-2.303638220584.88678822983-6.310992796188.48513006077-0.06956136274770.568784450332-0.555441705243-0.3085286532110.2990216007770.0456314191769-0.309281165662-0.616238927198-0.1185429512190.616260958778-0.0422630694557-0.2173731151490.3840017669190.05375794009880.583310113191-10.511809065-8.47011256124-93.3500260131
411.06054911353-1.34738308971-1.055731242241.9665407728-0.07556323587147.13850148956-0.03646067205230.09393573824440.0704064580715-0.250230680746-0.01195907968660.428662295761-0.620450286999-0.1117964102660.02564261272020.468964330106-0.0731111435319-0.03448020044340.2815252160160.02387748648940.469216266841-9.20672419872-10.3007698752-81.5648947193
422.26657064596-0.2568747404481.100822006334.45477321710.1804296545938.732061246080.2480126437830.454550404789-0.0249453201664-1.326660613670.02693800217980.9832929070360.109881918031-0.902127547277-0.1582995154810.7296059524110.0306420382147-0.1648161846630.4727488407150.07272962383610.484250913564-12.31554587353.76365387004-92.0597308765
435.90613820597-1.124658364520.647281483642.798716065530.1921779198973.952258906480.2508876103560.6230605006840.514327182431-0.8943399753060.05242983718330.512196077423-0.024431443554-0.227740036468-0.1448995102790.7965387863040.0288984032988-0.03770177954240.3316654159720.09473308423210.344195126065-3.93407120525-4.14241710674-95.3097327204
440.3495455466310.435104897571-0.4951743368856.18574645192-0.4943453220370.337082143133-0.1004141495840.1279869954110.186949040256-0.6591419899560.1102437973580.232578398367-0.013872266134-0.0487376609055-0.06297672649340.597213610741-0.0179033854846-0.1244780295050.2839795528470.05201797502020.3893887083270.7237441103447.06379073148-88.8837881563
451.33799432167-0.4210674797190.7463498472284.525115387491.271144666472.384368006390.06239423292780.166928623172-0.0763767913072-0.448111744620.0153591300549-0.1127336632860.194661445210.233361991827-0.0639547046170.5671306894310.009766114756710.01119472363040.2553825145460.01211114671150.2446378952268.53179481267-18.8683930674-87.8446218173
462.08156468499-0.130169125392-1.472864516616.866258091942.098030775233.62974117169-0.02426812279840.610967910396-0.528575435625-1.29026864401-0.06525503975140.2312076718960.8120494312930.08037846880140.03262560466110.9499616259050.0388904372432-0.01887645058290.324130178763-0.00397693450650.2901968371389.54835315251-33.8118795641-95.9801283671
475.35781807339-0.214112859045-3.369050665374.799229431091.796585730496.99453372744-0.217869314336-0.05753612885480.0661960110446-0.08600062159230.0506061126909-0.7570922671670.449335159970.6585696509790.1438781338560.433662879543-0.0272260839010.05818220967910.3319799048610.04963627158760.45276804770134.1136423648-47.433694021-39.667268762
486.96035945514-1.305248836691.762214323268.352074456112.984478327148.67741855639-0.1390607454350.5190425453830.861199725126-1.12777802534-0.142577461539-1.2607150073-0.3419574353280.5555478176370.3095008918570.7144458696140.005755723878120.1409222709210.348383644610.0730095813610.50616580433829.3153897896-52.2305233161-55.3027752649
491.141226510660.007301132747511.250241454012.78395147883-0.1336285154722.5430916556-0.005257862193780.2459216078560.0567065282285-0.4027083734470.0572531393519-0.357227307967-0.1548286269050.155232328587-0.03928323005250.499754799944-0.002525747138840.1020354820460.2858451266970.05072155629070.32037011627627.5076258235-55.4966883623-46.4518157476
508.21787662296-3.8186537333-0.9837250523454.515308712522.074812775824.013596988250.2276595380551.78479347197-0.789012630696-0.671712425869-0.496059703881-0.3907975702520.8007318312710.5056660078330.2394030425981.231389378470.1428014165570.1966195297340.549745751586-0.04001684322160.60892303045330.0828632222-66.8439169777-60.9310428833
510.246491813420.8280420752820.2264265041166.106010608951.258414352511.215853808290.0463340170230.10892277847-0.102565668772-0.463042087370.0150805824004-0.4465610244060.0682754659040.0344613060036-0.05515184577130.5800167869030.05838850913880.01086054884550.261690350993-0.02100582269860.30172033532718.7830718819-68.3885736972-51.9169417065
520.3736903667890.4667429011370.650698081695.750502849061.215859320461.12136042079-0.01958796431780.122469396235-0.0284600542276-0.55557852691-0.10675977633-0.10269860792-0.146540855961-0.01374357929980.03793114506670.674386500617-0.004032512684990.02302363866440.292509670661-0.01756534914610.25495043109616.7088406646-62.2410624137-52.9905682024
533.8738161875-1.230666869220.8850112602058.59944178691-1.025587754842.34837614202-0.07386382355540.140979056011-0.168483665215-0.2271407380490.1504837312570.239401668940.0397763754355-0.336484259708-0.06644063126680.543483202007-0.02034697974730.003326003562150.2265518065590.01671000347130.199782277599.24258546179-52.0839474122-48.0431259549
542.263734971091.3437454927-1.319857302124.46401636282-5.919610813668.077535099560.05351773010210.2842181151470.0563454660673-1.073605001570.06089175220080.339191821040.238080164663-0.0876729717877-0.1888989959780.4944449812240.0311075748009-0.009205105124170.2326131841-0.003056732612730.2586733285553.64693008456-42.9045137005-50.6394620468
556.885964846992.16042764761-2.474860083352.2201273584-2.934098031644.784412712130.1630068316250.4227181419370.399281698033-0.2370195758070.148862256224-0.06035572522530.050064270388-0.235851496005-0.2788067928890.6871844226680.05292920982170.01086283998980.2677239698660.07978947890040.3024071989416.9154840949-31.2680821663-54.0731597512
568.816203082244.11610687703-3.284034335994.6108242401-5.683914697897.6253371957-0.1952534140860.3500613089070.45794245125-0.6492707067380.117105996426-0.04985650872440.473453726723-0.1881330730530.1193830269980.8476644041470.03786081671970.01325092480050.255227230150.03318454910210.3057032462239.73839689386-27.0306632079-58.445961244
571.499620831930.63319665643-0.1792278115843.52550611568-1.275808153765.1155058320.119920892736-0.0157874800291-0.372295633662-0.265255188809-0.196732654043-0.6686029422890.3668073201670.3107250717295.4689245892E-50.5037406577020.0557677796958-0.04499674171010.274439566035-0.01536534353850.3760812339726.5510065791-77.8046658191-38.7450261916
586.18051760943.83285215454-0.859478707937.90202060799-1.608114328285.517323657670.404607227207-1.17535044986-0.6257697244351.10910875345-0.359070526773-0.6913337546980.59352470490.2926432306960.1776325140390.8065582233550.0169176107639-0.1276270781390.414444224680.0674379218440.47558762139423.9047420283-79.4698098702-20.1961664557
590.72176631264-0.2168368115830.4398505702031.363683598990.224356816592.31525394378-0.0142027676174-0.143432711646-0.1206549762490.300219615849-0.038511576959-0.1174525147470.09613582230840.01308708482550.02858095422080.669639354326-0.0152217417283-0.03022560891680.2770387883950.0410503966890.28741706789213.3488917325-73.8016023137-26.2541322008
601.62452533119-0.755108743101-0.4117625970597.219894115932.663678058452.699909724810.02963506985760.0567170107978-0.323243792195-0.252121658709-0.02001336468890.1402548796830.322562591397-0.05986731313750.01539034712980.581319028388-0.0119991007347-0.06926741076670.2371420797380.004787538878990.2686278259757.22563788235-84.8349743526-47.8604688458
612.13016907751-3.22295048622-2.03113050717.992735313175.191485449923.46156603169-0.4199649375310.377263813767-0.953852010194-0.3698726712650.4491213867720.1352177743240.332966465925-0.2004573795340.06693424524280.678310179998-0.0556969666189-0.01253946252240.380836537485-0.1102379614410.4696769662066.23012770631-96.9429414598-55.3252247861
621.52117288647-1.136246795080.3141711954366.417873431690.4132222279313.195670384390.0159050693807-0.01959491765380.07763632232160.3962248205950.138233147254-1.178075569690.08989553531850.546954507607-0.1154047017390.467785014092-0.0440113544954-0.1393806246820.4220789586340.02796255952050.51308454158129.2138513826-58.634950581-19.2309263539
631.76331499974-0.5252320268430.3171769358325.71327394884-3.489578373864.46297813260.0868532040147-0.208048237750.1620633215960.223104293368-0.141605715442-0.495992662419-0.07189933863220.1965799637210.05215901906040.495716548373-0.0387247656886-0.08153490355350.273542682987-0.02432763896880.29574747917524.3886505296-53.8015916126-22.5359112533
641.97547576633-2.298441707780.7872842630047.48345860162-0.2095817803894.15886196169-0.146800407033-0.2111800384691.514218758120.139609564043-0.14669912313-1.37971560987-0.378830998671.031103136220.2542351620750.792963066765-0.148696268636-0.009018756236950.54229011650.024873790640.89366568539426.9968923089-36.0877188902-24.926257256
650.563480164498-0.0196145559435-0.69274578662.83085122097-2.840132221425.277748148360.0485428039774-0.1523467601620.1699405295290.256298800012-0.0469862339017-0.178583616717-0.3007120661280.1377414134920.006068203278660.532576639526-0.0253536771752-0.01399693791560.230547527286-0.01678661695070.27408109947517.7204328688-43.7258145409-33.5142703234
665.134868978423.92807503246-4.322382924937.03863754762-5.380774910884.706035794870.08319893370750.02272630065850.554750482680.5737656041240.08734837182220.0351226407206-0.782169731121-0.10181890278-0.1643552235570.665797329802-0.00446958375956-0.03235533862510.300279350359-0.003866340397890.39527269615217.2996809154-33.2185628909-35.6155186237
672.657582809550.935288892813-0.4832203245442.69133549480.1778106497521.500076861230.0990109821551-0.2218648402370.03984541105250.311324008306-0.02194217875370.0519750866728-0.203233724539-0.0911977819451-0.04901931260090.6224672610220.0101809137878-0.01407028576180.2590640876370.007752297290560.2260161073888.83009093422-55.3213764851-23.1331157351
683.23464553266-0.843752296905-1.3482363683.350327434550.7535890699588.657408750550.1428201629860.15416973357-0.158862270948-0.5000699987750.03243084764160.3106959529860.0413447440316-0.80035438869-0.1135511760270.549830065852-0.02690513994730.007987073345720.2567213965560.03107829502160.304852269498-0.0716076696616-60.4737162738-22.1496086041
692.368792647780.9483337556091.264663223492.097352501390.7189721048726.912320567270.11297683907-0.6266503099390.06345989932561.02100621828-0.1232454189840.150667722601-0.134540035602-0.2425489989170.02031145754961.005038555090.02213814466990.05612504800980.524899010786-0.02780263536390.2827602649015.83628892003-58.9394473102-3.25058063978
704.77283622072-1.422604699720.8175007632412.459052204251.040295511251.968392953060.00250303532966-0.7241995889920.07444620134211.32138268232-0.1003454133280.215667754753-0.416602583634-0.947110113340.08875042245630.9875114782080.05604992404420.09931799195910.7902277000990.02697837480850.300050401771.09327300593-58.42520924113.18057022561
711.74208898892-0.3956600091910.2358350715424.947094234560.05735107358767.85739403954-0.06680610243790.238914902163-0.0146285745388-0.3070526007660.034025676641-0.4833336464610.09186405339720.6108542876870.007244439462260.281868319782-0.01234385219550.001845824022580.3067877558690.03757524808030.38348898920128.9631357952-49.607707362325.1506093878
725.90658352767-0.4586954291151.017334353226.92977931052-3.751350574284.865264710660.5768738300090.747642980895-0.735358551908-0.927061911296-0.312820921563-0.8110925298860.3652904883960.662359272186-0.2177403969350.5681319939840.0671258438862-0.04044977817620.418418831169-0.1319287152520.4886343422826.8227927076-65.459262010915.2138061334
730.4239325098370.514726793392-0.1402442282164.67314088908-0.3680907886680.784697075034-0.05863063163310.201975619635-0.132122104562-0.718526324234-0.01169903529530.0132012909140.0590162842096-0.001047301927570.09706698694910.438435835114-0.000836800826425-0.04328502920310.295736290171-0.04759224434340.29589966057916.3246223568-65.231183514121.2494999162
740.680311958102-0.2283544838350.1349361454695.41836943771-2.308017480552.418322162970.03265696494470.1875958423910.0554047849871-0.07033181551120.03935731838390.247820732477-0.295416295364-0.0112761145049-0.09398206960060.380588715350.00755710479262-0.05833518208870.3100575707320.03479256811590.2663125834259.19831639046-38.717477266320.6935016017
757.12876363731.10767590809-1.820283947410.970387378499-2.314795780555.40152873063-0.0586380858982-0.158523394008-0.428420740522-0.442524477849-0.442226157832-1.260977407120.5743467330950.6670584630840.5251131242620.4471229682140.057225878163-0.03104701746170.331454913957-0.01221918320280.6026257212131.2193687658-74.41796182830.5755734096
761.800125802511.2196504891-1.193822324713.105309635371.25945410784.401356276430.0482614218288-0.203169838945-0.3890784452780.529599334195-0.243444853014-0.6412220501610.9965550940320.749829631302-0.0793594916192-0.07846271784540.0359261806404-0.0817694384770.355374570776-0.04549354831550.56889241051125.2134230797-76.502925030136.9845667562
772.79571682637-2.512234804290.4889216287073.5461359538-2.524293674325.35119141164-0.1261835055550.0751963119435-0.4548851918511.52462289419-0.0568656612128-1.551437463750.4029576668581.2655742730.08713876757950.7672969490110.0450860615214-0.2685637374510.4390828917040.08793370119830.72473591543428.2031671141-75.784994527151.3083244879
781.23040801870.0719574617797-0.4806279059541.017430718470.9130238072863.35460413833-0.00897547174971-0.241616365035-0.3693119338590.9193572664380.0235447120214-0.1260667906390.4774737338210.343436111514-0.09963576732140.733444228394-0.019465337193-0.06903080422060.2943308892320.06106708237290.43010107587816.9883793742-74.498570707249.1655984403
790.9394330475360.08577533974850.9770654404991.485250819250.1539125208923.178924233920.0521900901532-0.189433209475-0.2359890262330.721322999649-0.0785394673062-0.04811433227460.131654218731-0.0161267494823-0.02253081668230.543172643251-0.0424402929887-0.0181657430020.2644539088620.04350899421330.32969584747312.9908787454-71.334804896847.0549617877
802.077549996251.216135668510.1964799588459.104592653.642434173993.892212781330.002820378509270.23545657175-0.499824386625-0.157338232593-0.01167686402420.1525568246150.675882381084-0.2915717494750.004185815216720.484549094723-0.0709245306446-0.04065475948690.345410062674-0.03822891399580.4499922057755.43723330952-88.100927840725.6557722402
811.603132873151.059993987560.9035150013812.61425415366-1.67176407372.964467326790.0580629836415-0.157996333715-0.1982629341690.902214106009-0.280667338597-0.890415117985-0.2734016479640.2621095745380.158192214430.64646317507-0.0447103131687-0.1691040015990.3346389930690.07373594632080.4688812866328.4713246833-53.308000535551.1787831485
823.354098986772.1155142517-2.95906012955.695289437141.771049263656.25780180970.184830786202-0.273942464661.33001295510.5810711926320.285946670171-0.57035733458-1.185395366790.561779496929-0.4756357026420.971320183392-0.0993035077416-0.1257458626640.4005326843990.03205314015950.64780730188229.1907261024-34.264973721545.5654681565
831.05569568550.2551869560280.0539940750931.76160894033-0.3845074421881.591984347620.0839073788402-0.2735126543160.03073608550240.94808426619-0.09686513749140.172456610979-0.348029513926-0.1038952208140.02938879951830.783567594401-0.01480767031060.02668689017710.303610847298-0.0003265415795180.30390077447612.582490722-49.283514309453.5919883892
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 0 through 35 )
2X-RAY DIFFRACTION2chain 'A' and (resid 36 through 67 )
3X-RAY DIFFRACTION3chain 'A' and (resid 68 through 136 )
4X-RAY DIFFRACTION4chain 'A' and (resid 137 through 217 )
5X-RAY DIFFRACTION5chain 'B' and (resid -2 through 17 )
6X-RAY DIFFRACTION6chain 'B' and (resid 18 through 42 )
7X-RAY DIFFRACTION7chain 'B' and (resid 43 through 59 )
8X-RAY DIFFRACTION8chain 'B' and (resid 60 through 75 )
9X-RAY DIFFRACTION9chain 'B' and (resid 76 through 162 )
10X-RAY DIFFRACTION10chain 'B' and (resid 163 through 173 )
11X-RAY DIFFRACTION11chain 'B' and (resid 174 through 183 )
12X-RAY DIFFRACTION12chain 'B' and (resid 184 through 204 )
13X-RAY DIFFRACTION13chain 'B' and (resid 205 through 217 )
14X-RAY DIFFRACTION14chain 'C' and (resid 0 through 28 )
15X-RAY DIFFRACTION15chain 'C' and (resid 29 through 42 )
16X-RAY DIFFRACTION16chain 'C' and (resid 43 through 67 )
17X-RAY DIFFRACTION17chain 'C' and (resid 68 through 105 )
18X-RAY DIFFRACTION18chain 'C' and (resid 106 through 118 )
19X-RAY DIFFRACTION19chain 'C' and (resid 119 through 136 )
20X-RAY DIFFRACTION20chain 'C' and (resid 137 through 162 )
21X-RAY DIFFRACTION21chain 'C' and (resid 163 through 173 )
22X-RAY DIFFRACTION22chain 'C' and (resid 174 through 183 )
23X-RAY DIFFRACTION23chain 'C' and (resid 184 through 204 )
24X-RAY DIFFRACTION24chain 'C' and (resid 205 through 218 )
25X-RAY DIFFRACTION25chain 'D' and (resid 3 through 42 )
26X-RAY DIFFRACTION26chain 'D' and (resid 43 through 67 )
27X-RAY DIFFRACTION27chain 'D' and (resid 68 through 173 )
28X-RAY DIFFRACTION28chain 'D' and (resid 174 through 217 )
29X-RAY DIFFRACTION29chain 'E' and (resid -2 through 21 )
30X-RAY DIFFRACTION30chain 'E' and (resid 22 through 35 )
31X-RAY DIFFRACTION31chain 'E' and (resid 36 through 53 )
32X-RAY DIFFRACTION32chain 'E' and (resid 54 through 67 )
33X-RAY DIFFRACTION33chain 'E' and (resid 68 through 105 )
34X-RAY DIFFRACTION34chain 'E' and (resid 106 through 118 )
35X-RAY DIFFRACTION35chain 'E' and (resid 119 through 162 )
36X-RAY DIFFRACTION36chain 'E' and (resid 163 through 183 )
37X-RAY DIFFRACTION37chain 'E' and (resid 184 through 204 )
38X-RAY DIFFRACTION38chain 'E' and (resid 205 through 218 )
39X-RAY DIFFRACTION39chain 'F' and (resid 2 through 12 )
40X-RAY DIFFRACTION40chain 'F' and (resid 13 through 24 )
41X-RAY DIFFRACTION41chain 'F' and (resid 25 through 42 )
42X-RAY DIFFRACTION42chain 'F' and (resid 43 through 59 )
43X-RAY DIFFRACTION43chain 'F' and (resid 60 through 75 )
44X-RAY DIFFRACTION44chain 'F' and (resid 76 through 136 )
45X-RAY DIFFRACTION45chain 'F' and (resid 137 through 204 )
46X-RAY DIFFRACTION46chain 'F' and (resid 205 through 218 )
47X-RAY DIFFRACTION47chain 'G' and (resid -2 through 12 )
48X-RAY DIFFRACTION48chain 'G' and (resid 13 through 24 )
49X-RAY DIFFRACTION49chain 'G' and (resid 25 through 53 )
50X-RAY DIFFRACTION50chain 'G' and (resid 54 through 67 )
51X-RAY DIFFRACTION51chain 'G' and (resid 68 through 105 )
52X-RAY DIFFRACTION52chain 'G' and (resid 106 through 136 )
53X-RAY DIFFRACTION53chain 'G' and (resid 137 through 162 )
54X-RAY DIFFRACTION54chain 'G' and (resid 163 through 183 )
55X-RAY DIFFRACTION55chain 'G' and (resid 184 through 204 )
56X-RAY DIFFRACTION56chain 'G' and (resid 205 through 217 )
57X-RAY DIFFRACTION57chain 'H' and (resid 3 through 42 )
58X-RAY DIFFRACTION58chain 'H' and (resid 43 through 67 )
59X-RAY DIFFRACTION59chain 'H' and (resid 68 through 151 )
60X-RAY DIFFRACTION60chain 'H' and (resid 152 through 204 )
61X-RAY DIFFRACTION61chain 'H' and (resid 205 through 218 )
62X-RAY DIFFRACTION62chain 'I' and (resid -2 through 21 )
63X-RAY DIFFRACTION63chain 'I' and (resid 22 through 53 )
64X-RAY DIFFRACTION64chain 'I' and (resid 54 through 67 )
65X-RAY DIFFRACTION65chain 'I' and (resid 68 through 105 )
66X-RAY DIFFRACTION66chain 'I' and (resid 106 through 118 )
67X-RAY DIFFRACTION67chain 'I' and (resid 119 through 162 )
68X-RAY DIFFRACTION68chain 'I' and (resid 163 through 173 )
69X-RAY DIFFRACTION69chain 'I' and (resid 174 through 204 )
70X-RAY DIFFRACTION70chain 'I' and (resid 205 through 218 )
71X-RAY DIFFRACTION71chain 'J' and (resid 0 through 42 )
72X-RAY DIFFRACTION72chain 'J' and (resid 43 through 67 )
73X-RAY DIFFRACTION73chain 'J' and (resid 68 through 136 )
74X-RAY DIFFRACTION74chain 'J' and (resid 137 through 217 )
75X-RAY DIFFRACTION75chain 'K' and (resid -2 through 17 )
76X-RAY DIFFRACTION76chain 'K' and (resid 18 through 42 )
77X-RAY DIFFRACTION77chain 'K' and (resid 43 through 59 )
78X-RAY DIFFRACTION78chain 'K' and (resid 60 through 95 )
79X-RAY DIFFRACTION79chain 'K' and (resid 96 through 162 )
80X-RAY DIFFRACTION80chain 'K' and (resid 163 through 217 )
81X-RAY DIFFRACTION81chain 'L' and (resid 1 through 53 )
82X-RAY DIFFRACTION82chain 'L' and (resid 54 through 67 )
83X-RAY DIFFRACTION83chain 'L' and (resid 68 through 217 )

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more