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Showing all 38 items for (author: stoddard & d)
![](data/emdb/media/40260/emdbimg.jpg)
EMDB-40260:
CryoEM map of a de novo designed T=4 icosahedral nanocage hierarchically built from pseudosymmetric trimers; design Ico(T=4)-4
Method: single particle / : Borst AJ, Kibler RD, Lee S
![](data/emdb/media/40267/emdbimg.jpg)
EMDB-40267:
CryoEM map of a T=1 off-target state of design Ico(T=4)-4
Method: single particle / : Borst AJ, Kibler RD, Lee S
![](data/emdb/media/40268/emdbimg.jpg)
EMDB-40268:
CryoEM map of a de novo designed T=4 octahedral nanocage hierarchically built from pseudosymmetric trimers; design Oct(T=4)-3
Method: single particle / : Philomin A, Borst AJ, Kibler RD
![](data/emdb/media/40269/emdbimg.jpg)
EMDB-40269:
CryoEM map of a T=1 off-target state of design Oct(T=4)-3
Method: single particle / : Philomin A, Borst AJ
![](data/emdb/media/40208/emdbimg.jpg)
EMDB-40208:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G
![](data/emdb/media/40209/mapi/surf_x.jpg)
EMDB-40209:
Chlorophyll-binding region of de novo-designed nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G
![](data/pdb/img/8glt.jpg)
PDB-8glt:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G
![](data/emdb/media/28534/emdbimg.jpg)
EMDB-28534:
Type IIS Restriction Endonuclease PaqCI, DNA bound
Method: single particle / : Kennedy MA, Stoddard BL
![](data/pdb/img/8epx.jpg)
PDB-8epx:
Type IIS Restriction Endonuclease PaqCI, DNA bound
Method: single particle / : Kennedy MA, Stoddard BL
![](data/emdb/media/28244/emdbimg.jpg)
EMDB-28244:
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Method: single particle / : Shen BW, Stoddard BL
![](data/emdb/media/28248/emdbimg.jpg)
EMDB-28248:
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Method: single particle / : Shen BW, Stoddard BL
![](data/pdb/img/8emc.jpg)
PDB-8emc:
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Method: single particle / : Shen BW, Stoddard BL
![](data/pdb/img/8emh.jpg)
PDB-8emh:
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Method: single particle / : Shen BW, Stoddard BL
![](data/emdb/media/29052/emdbimg.jpg)
EMDB-29052:
SARS-CoV-2 Spike Hexapro - C68.59 Fab (Class 3 - disordered)
Method: single particle / : Croft JT, Lee KK
![](data/emdb/media/29053/emdbimg.jpg)
EMDB-29053:
SARS-CoV-2 Spike Hexapro - C59.68 Fab (Class 1 - No Fab bound)
Method: single particle / : Croft JT, Lee KK
![](data/emdb/media/29054/emdbimg.jpg)
EMDB-29054:
SARS-CoV-2 Spike Hexapro - C68.59 Fab (Class 2 - Fab bound)
Method: single particle / : Croft JT, Lee KK
![](data/emdb/media/24425/snaps2.jpg)
EMDB-24425:
Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces
Method: single particle / : Shen BW, Stoddard BL
![](data/pdb/media/7rdr/snapsdep.jpg)
PDB-7rdr:
Circular tandem repeat protein with novel repeat topology and enhanced subunit contact surfaces
Method: single particle / : Shen BW, Stoddard BL
![](data/emdb/media/22712/snaps2.jpg)
EMDB-22712:
Subtomogram average of flagellar axoneme doublet from the wild type Tetrahymena thermophila
Method: subtomogram averaging / : Fabritius AS, Bayless BA, Li S, Stoddard D, Heydeck W, Ebmeier CC, Anderson L, Gunnels T, Nachiappan C, Whitall J, Old W, Agard DA, Nicastro D, Winey M
![](data/emdb/media/22713/snaps2.jpg)
EMDB-22713:
Subtomogram average of flagellar axoneme doublet from the Tetrahymena thermophila Fap115 knockout mutant
Method: subtomogram averaging / : Fabritius AS, Bayless BA, Li S, Stoddard D, Heydeck W, Ebmeier CC, Anderson L, Gunnels T, Nachiappan C, Whitall J, Old W, Agard DA, Nicastro D, Winey M
![](data/emdb/media/23461/snaps2.jpg)
EMDB-23461:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL
![](data/emdb/media/23543/snaps2.jpg)
EMDB-23543:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL
![](data/pdb/media/7lo5/snapsdep.jpg)
PDB-7lo5:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL
![](data/pdb/media/7lvv/snapsdep.jpg)
PDB-7lvv:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL
![](data/emdb/media/21955/snaps2.jpg)
EMDB-21955:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S
![](data/emdb/media/21956/snaps2.jpg)
EMDB-21956:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S
![](data/emdb/media/21957/snaps2.jpg)
EMDB-21957:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S
![](data/pdb/media/6wxe/snapsdep.jpg)
PDB-6wxe:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S
![](data/pdb/media/6wxf/snapsdep.jpg)
PDB-6wxf:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S
![](data/pdb/media/6wxg/snapsdep.jpg)
PDB-6wxg:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S
![](data/emdb/media/20309/snaps2.jpg)
EMDB-20309:
cryoEM structure of yeast glucokinase filament
Method: helical / : Lynch EM, Dosey AM, Farrell DP, Stoddard PR, Kollman JM
![](data/pdb/media/6pdt/snapsdep.jpg)
PDB-6pdt:
cryoEM structure of yeast glucokinase filament
Method: helical / : Lynch EM, Dosey AM, Farrell DP, Stoddard PR, Kollman JM
![](data/emdb/media/9127/snaps2.jpg)
EMDB-9127:
A nucleosome bridging mechanism for activation of a maintenance DNA methyltransferase
Method: single particle / : Stoddard CI, Feng S, Campbell MG, Liu W, Wang H, Zhong X, Bernatavichute Y, Cheng Y, Jacobsen SE, Narlikar GJ
![](data/emdb/media/7805/snaps2.jpg)
EMDB-7805:
Subtomogram average (699 axonemal repeats) of isolated Rib72A/B double knock out Tetrahymena cilia showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D
![](data/emdb/media/7806/snaps2.jpg)
EMDB-7806:
Subtomogram average (758 axonemal repeats) of isolated Rib72A knock out Tetrahymena cilia showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D
![](data/emdb/media/7807/snaps2.jpg)
EMDB-7807:
Subtomogram average (735 axonemal repeats) of isolated Rib72B knock out Tetrahymena cilia Rescued with Rib72B-GFP, showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D
![](data/emdb/media/7811/snaps2.jpg)
EMDB-7811:
Subtomogram average (702 axonemal repeats) of isolated Rib72B knock out Tetrahymena cilia showing the lumen of the ciliary doublet microtubule (DMT)
Method: subtomogram averaging / : Stoddard D, Zhao Y, Bayless B, Gui L, Louka P, Dave D, Surwayanshi S, Tomasi R, Dupuis-Williams P, Baroud C, Gaertig J, Winey M, Nicastro D
![](data/emdb/media/8696/snaps2.jpg)
EMDB-8696:
Regulation of Rvb1/Rvb2 by a domain within the INO80 chromatin remodeling complex implicates the yeast Rvbs as protein assembly chaperones
Method: single particle / : Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ