[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 65 items for (author: shah & nb)

EMDB-70069:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ, Global Map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70070:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ- local map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70071:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-52411:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hug:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52409:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52410:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides SA, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-53509:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hue:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9huf:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9r1h:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52168:
LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens
Method: single particle / : Elders H, Schmidt JJ, Fiedler R, Hofmann E, Narberhaus F

PDB-9hh1:
LysR Type Transcriptional Regulator LsrB from Agrobacterium tumefaciens
Method: single particle / : Elders H, Schmidt JJ, Fiedler R, Hofmann E, Narberhaus F

EMDB-50849:
Cryo-EM structure of E. coli transcription factor NrdR in the ATP-bound, filamentous form
Method: single particle / : Martinez-Carranza M, Rozman Grinberg I, Sjoberg BM, Logan DT, Stenmark P

EMDB-50819:
Cryo-EM structure of E. coli transcription factor NrdR in complex with DNA
Method: single particle / : Banerjee I, Bimai O, Martinez-Carranza M, Stenmark P, Sjoberg BM, Rozman Grinberg I, Logan DT

EMDB-42041:
CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

PDB-8u9y:
CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2_New interface
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

EMDB-41774:
CryoEM structure of non-neutralizing bivalent antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

PDB-8tzy:
CryoEM structure of non-neutralizing bivalent antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

EMDB-41703:
CryoEM structure of non-neutralizing antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

PDB-8txq:
CryoEM structure of non-neutralizing antibody CBH-4B in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

EMDB-41245:
CryoEM structure of Fab HC84.26-HCV E2 complex
Method: single particle / : Shahid S, Liqun J, LIu Y, Hasan SS, Mariuzza RA

EMDB-41247:
CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

EMDB-41275:
CryoEM structure of neutralizing antibodies CBH-7 and HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Jiang L, Liu Y, Hasan SS, Mariuzza RA

PDB-8tgv:
CryoEM structure of Fab HC84.26-HCV E2 complex
Method: single particle / : Shahid S, Liqun J, LIu Y, Hasan SS, Mariuzza RA

PDB-8tgz:
CryoEM structure of neutralizing antibody HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Liqun J, Liu Y, Hasan SS, Mariuzza RA

PDB-8thz:
CryoEM structure of neutralizing antibodies CBH-7 and HC84.26 in complex with Hepatitis C virus envelope glycoprotein E2
Method: single particle / : Shahid S, Jiang L, Liu Y, Hasan SS, Mariuzza RA

EMDB-41617:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M, Sun M

PDB-8tu6:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M

EMDB-40646:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

EMDB-40716:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 local refined
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

PDB-8so3:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

PDB-8sr0:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 local refined
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

PDB-8b7y:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

EMDB-14121:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

PDB-7qq3:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

EMDB-24210:
The 3D structure and in situ arrangements of CatSper channel from the cryo-electron tomography and subtomographic average of mouse wild type sperm flagella
Method: subtomogram averaging / : Zhao Y, Wang H, Wiesehoefer C, Shah NB, Reetz E, Hwang J, Huang X, Lishko PV, Davies KM, Wennemuth G, Nicastro D, Chung JJ

EMDB-26206:
The 3D structure and in situ arrangements (Forward slash) of CatSper channel from the cryo-electron tomography and subtomographic average of mouse efcab9 mutant sperm flagella
Method: subtomogram averaging / : Zhao Y, Wang H, Wiesehoefer C, Shah NB, Reetz E, Hwang J, Huang X, Lishko PV, Davies KM, Wennemuth G, Nicastro D, Chung JJ

EMDB-26207:
The 3D structure and in situ arrangements (Backslash) of CatSper channel from the cryo-electron tomography and subtomographic average of mouse efcab9 mutant sperm flagella
Method: subtomogram averaging / : Zhao Y, Wang H, Wiesehoefer C, Shah NB, Reetz E, Hwang J, Huang X, Lishko PV, Davies KM, Wennemuth G, Nicastro D, Chung JJ

EMDB-13178:
Streptomyces coelicolor ATP-loaded NrdR
Method: single particle / : Martinez-Carranza M, Stenmark P

EMDB-13179:
Streptomyces coelicolor dATP/ATP-loaded NrdR in complex with its cognate DNA
Method: single particle / : Martinez-Carranza M, Stenmark P

EMDB-13182:
Streptomyces coelicolor dATP/ATP-loaded NrdR octamer
Method: single particle / : Martinez-Carranza M, Stenmark P

PDB-7p37:
Streptomyces coelicolor ATP-loaded NrdR
Method: single particle / : Martinez-Carranza M, Stenmark P

PDB-7p3f:
Streptomyces coelicolor dATP/ATP-loaded NrdR in complex with its cognate DNA
Method: single particle / : Martinez-Carranza M, Stenmark P

PDB-7p3q:
Streptomyces coelicolor dATP/ATP-loaded NrdR octamer
Method: single particle / : Martinez-Carranza M, Stenmark P

EMDB-13146:
Human mitochondrial Lon protease with substrate in the ATPase domain
Method: single particle / : Valentin Gese G, Shahzad S

EMDB-13147:
Human mitochondrial Lon protease without substrate
Method: single particle / : Valentin Gese G, Shahzad S

EMDB-13148:
Human mitochondrial Lon protease with substrate in the ATPase and protease domains
Method: single particle / : Valentin Gese G, Shahzad S

EMDB-11172:
Disulfide-locked early prepore intermedilysin-CD59
Method: single particle / : Shah NR, Bubeck D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more