[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,517 items for (author: sai & l)

EMDB-55369:
Control media rat neuronal 80S ribosome - consensus
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55370:
Control media rat neuronal 80S ribosome state - decoding
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55371:
Control media rat neuronal 80S ribosome state - peptide bond formation
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55372:
Control media rat neuronal 80S ribosome state - pre-translocating
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55373:
Control media rat neuronal 80S ribosome state - hibernating I
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55374:
Nutrient deprived rat neuronal 80S ribosome - consensus
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55375:
Nutrient deprived rat neuronal 80S ribosome state - decoding
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55376:
Nutrient deprived rat neuronal 80S ribosome state - peptide bond formation
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55377:
Nutrient deprived rat neuronal 80S ribosome state - pre-translocating
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55378:
Nutrient deprived rat neuronal 80S ribosome state - hibernating II
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55379:
Nutrient deprived rat neuronal 80S ribosome state - hibernating III
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55381:
Nutrient deprived rat neuronal 80S ribosome state - hibernating IV
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55383:
Nutrient deprived rat neuronal 110S disome
Method: subtomogram averaging / : Schwarz A, Schuman EM

EMDB-55384:
1 h nitrogen + carbon starved yeast-rat-hybrid hibernating disome
Method: subtomogram averaging / : Schwarz A, Schuman EM, Dietrich LT

EMDB-55385:
3-4 h cold shock chicken neuronal hibernating tetrasome
Method: subtomogram averaging / : Schwarz A, Schuman EM, Dietrich LT

EMDB-66199:
Cryo-EM structure of Sigma28-RNAP open promoter complex from Pseudomonas aeruginosa
Method: single particle / : Nln S, Kumar V, Sahoo PK, Kandiah E, Jain D

PDB-9wsm:
Cryo-EM structure of Sigma28-RNAP open promoter complex from Pseudomonas aeruginosa
Method: single particle / : Nln S, Kumar V, Sahoo PK, Kandiah E, Jain D

EMDB-72207:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-72208:
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-63404:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-63405:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

PDB-9lut:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

PDB-9luu:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-68389:
P301L/S320F human tau filaments from mouse brain
Method: single particle / : Yanagisawa H, Kano M, Kimura T, Kikkawa M, Tomita T

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-66696:
Human KCNQ2-CaM in complex with QO-58 and PIP2
Method: single particle / : Zhao YW, Yang ZN, Guo JT, Du XN

EMDB-66788:
Human KCNQ2-CaM in complex with QO-83 and PIP2
Method: single particle / : Zhao YW, Yang ZN, Du XN, Guo JT

PDB-9xb9:
Human KCNQ2-CaM in complex with QO-58 and PIP2
Method: single particle / : Zhao YW, Yang ZN, Guo JT, Du XN

PDB-9xed:
Human KCNQ2-CaM in complex with QO-83 and PIP2
Method: single particle / : Zhao YW, Yang ZN, Du XN, Guo JT

EMDB-72358:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72359:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72361:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72362:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-62892:
Human KCNQ2-CaM in complex with QO-58
Method: single particle / : Zhao YW, Yang ZN, Du XN, Guo JT

PDB-9l8w:
Human KCNQ2-CaM in complex with QO-58
Method: single particle / : Zhao YW, Yang ZN, Du XN, Guo JT

EMDB-65385:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

PDB-9vvo:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

EMDB-71643:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

EMDB-71644:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

PDB-9pha:
CryoEM structure of the YonE portal protein from Bacillus phage SPbeta
Method: single particle / : Mishra BP, Ve T

PDB-9phb:
CryoEM structure of filament of Bacillus subtilis TIR domain protein SpbK
Method: helical / : Mishra BP, Ve T

PDB-9ly8:
Cryo-EM structure of carboxysomal midi-shell: T=9 shell under C1 symmetry
Method: single particle / : Li JX, Li TP, Wang SM, Zhang YZ, Liu LN, Wang P

PDB-9ly9:
Cryo-EM structure of carboxysomal mid-shell: T = 16 shell under C1 symmetry.
Method: single particle / : Li JX, Li TP, Wang SM, Zhang YZ, Liu LN, Wang P

EMDB-62694:
structure of MCT2-embigin complex
Method: single particle / : Xu B, Wang Y

EMDB-62696:
structure of MCT2-embigin-AR-C155858 complex
Method: single particle / : Xu B, Wang Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more