[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 52 items for (author: pak & aj)

EMDB-75946:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75947:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 1
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75949:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 2
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-73949:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-73950:
CryoEM map of CK52.1 in complex with Q23.V033GT
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9z9l:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-48928:
Cryo-EM map of APC/C-CDC20-UBE2C-H2A/H2B crosslinked complex
Method: single particle / : Skrajna A, Bordrug T, Brown NG, McGinty RK

EMDB-48984:
Cryo-EM map of APC/C-CDC20-UBE2C-H3/H4 crosslinked complex
Method: single particle / : Skrajna A, Bordrug T, Brown NG, McGinty RK

PDB-9n9r:
Model of APC/C-CDC20-UBE2C from H2A/H2B-bound complex
Method: single particle / : Skrajna A, Bodrug T, Brown NG, McGinty RK

PDB-9n9s:
Model of APC/C-CDC20-UBE2C from H3/H4-bound complex
Method: single particle / : Skrajna A, Bodrug T, Brown NG, McGinty RK

EMDB-47040:
Structure of rat beta-arrestin 1 by fiducial-assisted cryo-EM
Method: single particle / : Pakharukova N, Kahsai AW, Masoudi A, Lefkowitz RJ

EMDB-47042:
Structure of rat beta-arrestin 1 bound to allosteric inhibitor
Method: single particle / : Pakharukova N, Kahsai AW, Masoudi A, Lefkowitz RJ

PDB-9dng:
Structure of rat beta-arrestin 1 by fiducial-assisted cryo-EM
Method: single particle / : Pakharukova N, Kahsai AW, Masoudi A, Lefkowitz RJ

PDB-9dnm:
Structure of rat beta-arrestin 1 bound to allosteric inhibitor
Method: single particle / : Pakharukova N, Kahsai AW, Masoudi A, Lefkowitz RJ

EMDB-18904:
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)
Method: single particle / : Biela AP, Heddle JG

EMDB-18905:
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Method: single particle / : Biela AP, Heddle JG

EMDB-18906:
Structure of the Zn(II) triggered TRAP (S33HK35H) protein cage (levo form)
Method: single particle / : Biela AP

EMDB-18907:
Structure of the Zn(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Method: single particle / : Biela AP

EMDB-18908:
Structure of the Zn(II) triggered TRAP (K35C) protein cage (levo form)
Method: single particle / : Biela AP

EMDB-18909:
Structure of the Zn(II) triggered TRAP (K35C) protein cage (dextro form)
Method: single particle / : Biela AP

PDB-8r59:
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)
Method: single particle / : Biela AP, Heddle JG

PDB-8r5a:
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Method: single particle / : Biela AP, Heddle JG

EMDB-45459:
Structure of in vitro assembled B. anthracis S-layer protein Sap
Method: subtomogram averaging / : Leigh KE, Van der Verren SE, Remaut H, Kudryashev M

EMDB-14573:
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site TG)
Method: single particle / : Ghilarov D, Heddle JGH

PDB-7z9k:
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site TG)
Method: single particle / : Ghilarov D, Heddle JGH

EMDB-14570:
E.coli gyrase holocomplex with 217 bp DNA and albicidin
Method: single particle / : Ghilarov D, Heddle JGH, Suessmuth R

EMDB-14572:
E.coli gyrase holocomplex with 217 bp DNA and Albi-2
Method: single particle / : Ghilarov D, Heddle JGH

EMDB-14574:
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site AA)
Method: single particle / : Ghilarov D, Heddle JGH

PDB-7z9c:
E.coli gyrase holocomplex with 217 bp DNA and albicidin
Method: single particle / : Ghilarov D, Heddle JGH, Suessmuth R

PDB-7z9g:
E.coli gyrase holocomplex with 217 bp DNA and Albi-2
Method: single particle / : Ghilarov D, Heddle JGH

PDB-7z9m:
E.coli gyrase holocomplex with 217 bp DNA and Albi-1 (site AA)
Method: single particle / : Ghilarov D, Heddle JGH

EMDB-12950:
Cryo-EM structure of undecameric SlyB from Escherichia coli K12
Method: single particle / : Nguyen VS, Remaut H

EMDB-12945:
Cryo-EM reconstruction of decameric SlyB from Escherichia coli K12
Method: single particle / : Nguyen VS, Remaut H

EMDB-12946:
Cryo-EM reconstruction of dodecameric SlyB from Escherichia coli K12
Method: single particle / : Nguyen VS, Remaut H

EMDB-12947:
Cryo-EM structure of tridecameric SlyB from Escherichia coli K12
Method: single particle / : Nguyen VS, Remaut H

EMDB-12948:
Cryo-EM reconstruction of SlyB14-BamA from Escherichia coli
Method: single particle / : Nguyen VS, Remaut H

EMDB-12147:
Immature HIV-1 Gag partial hexamer with 1 Gag subunit missing, obtained by wedge-masked difference map PCA classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12148:
Immature HIV-1 Gag partial hexamer with 2 Gag subunits missing, obtained by wedge-masked difference map PCA classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12149:
Immature HIV-1 Gag partial hexamer with 3 Gag subunits missing, obtained by wedge-masked difference map PCA classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12150:
Immature HIV-1 Gag partial hexamer with 1 Gag subunit missing, obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12151:
Immature HIV-1 Gag partial hexamer with 2 Gag subunits missing, obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12152:
Immature HIV-1 Gag partial hexamer with 3 Gag subunits missing, obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-12153:
Immature HIV-1 Gag complete hexamer obtained by multi-reference classification
Method: subtomogram averaging / : Tan AWK, Pak AJ, Morado DR, Voth GA, Briggs JAG

EMDB-22357:
Structural Basis of the Activation of Heterotrimeric Gs-protein by Isoproterenol-bound Beta1-Adrenergic Receptor
Method: single particle / : Su M, Zhu L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more