[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 208 items for (author: orlov & i)

EMDB-18687:
Cryo-EM Structure of Regulated CBS Domain-Containing Pyrophosphatase without One Catalytic Domain
Method: single particle / : Moiseenko AV, Anashkin VA, Zamakhov IM, Sokolova OS, Baykov AA

EMDB-14342:
Six DNA Helix Bundle nanopore - State 1
Method: single particle / : Javed A, Ahmad K

EMDB-14343:
Six DNA duplex bundle nanopore - State 2
Method: single particle / : Javed A, Ahmad K

EMDB-14344:
Six DNA Helix Bundle nanopore - State 3
Method: single particle / : Javed A, Ahmad K

EMDB-14345:
Six DNA Helix Bundle nanopore - State 4
Method: single particle / : Javed A, Ahmad K

EMDB-14346:
Six DNA Helix Bundle nanopore - State 5
Method: single particle / : Javed A, Ahmad K

PDB-7ywh:
Six DNA Helix Bundle nanopore - State 1
Method: single particle / : Javed A, Ahmad K, Lanphere C, Coveney P, Howorka S, Orlova EV

PDB-7ywi:
Six DNA duplex bundle nanopore - State 2
Method: single particle / : Javed A, Ahmad K, Lanphere C, Coveney P, Howorka S, Orlova EV

PDB-7ywl:
Six DNA Helix Bundle nanopore - State 3
Method: single particle / : Javed A, Ahmad K, Lanphere C, Coveney P, Howorka S, Orlova EV

PDB-7ywn:
Six DNA Helix Bundle nanopore - State 4
Method: single particle / : Javed A, Ahmad K, Lanphere C, Orlova EV, Coveney P, Howorka S

PDB-7ywo:
Six DNA Helix Bundle nanopore - State 5
Method: single particle / : Javed A, Ahmad K, Lanphere C, Coveney P, Howorka S, Orlova EV

EMDB-16438:
Toroidal Dps-DNA assembly
Method: subtomogram averaging / : Chesnokov YM

EMDB-16439:
Dps-DNA filament-like assembly
Method: subtomogram averaging / : Chesnokov YM

EMDB-14509:
gp6/gp15/gp16 connector complex of bacteriophage SPP1
Method: single particle / : Orlov I, Roche S, Tavares P, Orlova EV

PDB-7z4w:
gp6/gp15/gp16 connector complex of bacteriophage SPP1
Method: single particle / : Orlov I, Roche S, Tavares P, Orlova EV

EMDB-13664:
GA1 bacteriophage portal protein
Method: single particle / : Javed A, Villanueva H

EMDB-13665:
PhiCPV4 bacteriophage Portal Protein
Method: single particle / : Javed A, Villanueva H

PDB-7pv2:
GA1 bacteriophage portal protein
Method: single particle / : Javed A, Villanueva H, Orlova EV, Savva R

PDB-7pv4:
PhiCPV4 bacteriophage Portal Protein
Method: single particle / : Javed A, Villanueva H, Orlova EV, Savva R

EMDB-12707:
O-Layer C14 at 2.58A - Local refinement with C14 symmetry of the O-layer of the outer membrane core complex from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK

EMDB-12708:
I-Layer C16 at 3.08A - Local refinement with C16 symmetry of I-layer of the outer membrane core complex from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK

EMDB-12709:
Stalk C1 at 3.71A - Local refinement without symmetry of the Stalk complex from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK

EMDB-12715:
IMC-Arches C6 at 8.33A - Refinement with C6 symmetry of the Inner Membrane Complex (IMC) with the Arches from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK

EMDB-12716:
Trimer of dimers TrwK/VirB4unbound C1 at 4.14A - Refinement without symmetry of TrwK/VirB4unbound trimer of dimers complex (with Hcp1) from the R388 type IV secretion system.
Method: single particle / : Vadakkepat AK, Mace K

EMDB-12717:
Dimer TrwK/VirB4unbound C1 at 3.49A - Local refinement without symmetry of the TrwK/VirB4unbound dimer complex from the R388 type IV secretion system.
Method: single particle / : Vadakkepat AK, Mace K

EMDB-12933:
IMC protomer C1 at 3.75A - Local refinement without symmetry of the inner membrane complex (IMC) protomer from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK

EMDB-13765:
OMCC C1 at 3.28A - Refinement without symmetry of the outer membrane core complex (O- and I-layer) from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK, Waksman G, Lukoyanova N

EMDB-13766:
Ab Initio model for IMC-Arches-Stalk from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Waksman G, Lukoyanova N

EMDB-13767:
IMC-Arches-Stalk C1 at 6.18A - Refinement of the IMC, Arches and Stalk complex without symmetry from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK

EMDB-13768:
Stalk C5 at 3.28A - Local refinement with C5 symmetry of the Stalk complex from the fully-assembled R388 type IV secretion system.
Method: single particle / : Mace K, Vadakkepat AK, Waksman G, Lukoyanova N

PDB-7o3j:
O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Lukoyanova N, Waksman G

PDB-7o3t:
I-layer structure (TrwF/VirB9NTD, TrwE/VirB10NTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Lukoyanova N, Waksman G

PDB-7o3v:
Stalk complex structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Lukoyanova N, Waksman G

PDB-7o41:
Hexameric composite model of the Inner Membrane Complex (IMC) with the Arches from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Lukoyanova N, Waksman G

PDB-7o42:
TrwK/VirB4unbound trimer of dimers complex (with Hcp1) from the R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Vadakkepat AK, Mace K, Lukoyanova N, Waksman G

PDB-7o43:
TrwK/VirB4unbound dimer complex from R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Vadakkepat AK, Mace K, Lukoyanova N, Waksman G

PDB-7oiu:
Inner Membrane Complex (IMC) protomer structure (TrwM/VirB3, TrwK/VirB4, TrwG/VirB8tails) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Lukoyanova N, Waksman G

PDB-7q1v:
Arches protomer (trimer of TrwG/VirB8peri) structure from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Method: single particle / : Mace K, Vadakkepat AK, Lukoyanova N, Waksman G

EMDB-11852:
Bovine Papillomavirus E1 DNA helicase-replication fork complex
Method: single particle / : Javed A, Major B

PDB-7apd:
Bovine Papillomavirus E1 DNA helicase-replication fork complex
Method: single particle / : Javed A, Major B, Stead J, Sanders CM, Orlova EV

EMDB-4620:
A dimer component of alpha-1 antitrypsin heat-induced polymers generated from wild-type M plasma protein and decorated with Fab 4B12
Method: single particle / : Elliston ELK, Redzej A, Orlova EV, Lomas DA, Irving JA

EMDB-4631:
A dimer component of alpha-1 antitrypsin polymers isolated from ZZ explant liver tissue and decorated with Fab 4B12 (component B with ~90 degree rotation around the dimer axis)
Method: single particle / : Faull SV, Elliston ELK, Orlova EV, Gooptu B, Lomas DA, Irving JA

EMDB-4632:
A dimer component of alpha-1 antitrypsin polymers isolated from ZZ explant liver tissue and decorated with Fab 4B12 (component A with ~60 degree rotation around the dimer axis)
Method: single particle / : Elliston ELK, Faull SV, Orlova EV, Gooptu B, Lomas DA, Irving JA

EMDB-10286:
Cubic Dps-DNA crystal structure in vitro
Method: subtomogram averaging / : Chesnokov YM, Kamyshinsky RA, Vasiliev AL

EMDB-10002:
BACTERIOPHAGE SPP1 PROCAPSID-II PROTEIN
Method: single particle / : Ignatiou A, Brasiles S

EMDB-4716:
BACTERIOPHAGE SPP1 MATURE CAPSID PROTEIN
Method: single particle / : Ignatiou A, El Sadek Fadel M

EMDB-4717:
BACTERIOPHAGE SPP1 PROCAPSID-I PROTEIN
Method: single particle / : Ignatiou A, Brasiles S

PDB-6r3a:
BACTERIOPHAGE SPP1 MATURE CAPSID PROTEIN
Method: single particle / : Ignatiou A, El Sadek Fadel M, Buerger J, Mielke T, Topf M, Tavares P

PDB-6r3b:
BACTERIOPHAGE SPP1 PROCAPSID-I PROTEIN
Method: single particle / : Ignatiou A, Brasiles S, El Sadek-Fadel M, Buerger J, Mielke T, Topf M, Tavares P

PDB-6rtl:
BACTERIOPHAGE SPP1 PROCAPSID-II PROTEIN
Method: single particle / : Ignatiou A, Brasiles S, El Sadek M, Buerger J, Mielke T, Topf M, Tavares P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more