[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 126 items for (author: oliver & aw)

EMDB-53281:
Single particle cryo-EM structure of the multidrug efflux pump MdtF from Escherichia coli
Method: single particle / : Lawrence R, Adams C, Sousa JS, Ahdash Z, Reading E

EMDB-53282:
Single particle cryo-EM structure of MdtF V610F
Method: single particle / : Lawrence R, Adams C, Sousa JS, Ahdash Z, Reading E

EMDB-53283:
Single particle cryo-EM structure of MdtF V610F with bound Rhodamine 6G
Method: single particle / : Lawrence R, Adams C, Sousa JS, Ahdash Z, Reading E

PDB-9qpr:
Single particle cryo-EM structure of the multidrug efflux pump MdtF from Escherichia coli
Method: single particle / : Lawrence R, Adams C, Sousa JS, Ahdash Z, Reading E

PDB-9qps:
Single particle cryo-EM structure of MdtF V610F
Method: single particle / : Lawrence R, Adams C, Sousa JS, Ahdash Z, Reading E

PDB-9qpt:
Single particle cryo-EM structure of MdtF V610F with bound Rhodamine 6G
Method: single particle / : Lawrence R, Adams C, Sousa JS, Ahdash Z, Reading E

EMDB-17449:
S. cerevisiae nexus-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17458:
S. cerevisiae ssDNA-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17459:
S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17460:
S. cerevisiae sCMGE with N-ter Mcm10 density
Method: single particle / : Henrikus SS, Willhoft O

EMDB-43683:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-43684:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzn:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzo:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-16916:
Bipartite interaction of TOPBP1 with the GINS complex
Method: single particle / : Day M, Oliver AW, Pearl LH

EMDB-40856:
Single particle reconstruction of the human LINE-1 ORF2p without substrate (apo)
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40858:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40859:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxt:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxu:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-16242:
Cryo-EM structure of RANBP10-CTLH SR4 complex
Method: single particle / : Sherpa D, Chrustowicz J

EMDB-16243:
Cryo-EM map of ARMC8-specific nanobody bound to CTLH-SR4
Method: single particle / : Chrustowicz J, Sherpa D

EMDB-18657:
PROTAC-mediated complex of KRAS with VHL/Elongin-B/Elongin-C/Cullin-2/Rbx1
Method: single particle / : Fischer G, Peter D, Arce-Solano S

PDB-8qu8:
PROTAC-mediated complex of KRAS with VHL/Elongin-B/Elongin-C/Cullin-2/Rbx1
Method: single particle / : Fischer G, Peter D, Arce-Solano S

EMDB-42124:
Cryo-EM structure of human STEAP1 in complex with AMG 509 Fab
Method: single particle / : Li F, Bailis JM

PDB-8ucd:
Cryo-EM structure of human STEAP1 in complex with AMG 509 Fab
Method: single particle / : Li F, Bailis JM, Zhang H

EMDB-41156:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41157:
Global reconstruction for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41158:
CS2it1p2_F7K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41160:
CS4tt1p1_E3K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41161:
gH base local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41179:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-41180:
Global reconstruction for HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JG, McLellan JS

PDB-8tco:
HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Method: single particle / : Goldsmith JA, McLellan JS

PDB-8tea:
HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab
Method: single particle / : Goldsmith JA, McLellan JS

EMDB-28228:
SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Method: single particle / : Yee AW, Morizumi T, Kim K, Kuo A, Ernst OP

PDB-8elj:
SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Method: single particle / : Yee AW, Morizumi T, Kim K, Kuo A, Ernst OP

EMDB-27692:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-27693:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (global refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-8dt8:
LM18/Nb136 bispecific tetra-nanobody immunoglobulin in complex with SARS-CoV-2-6P-Mut7 S protein (focused refinement)
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-16614:
HK97 Portal Protein In situ (prohead II)
Method: single particle / : Hawkins DEDP, Antson AA

EMDB-16624:
HK97 Prohead II as part of a DNA packaging complex
Method: single particle / : Hawkins DEDP, Antson AA

EMDB-16649:
HK97 DNA packaging complex
Method: single particle / : Hawkins DEDP, Antson AA

EMDB-16653:
HK97 portal/large terminase complex
Method: single particle / : Hawkins DEDP, Antson AA

EMDB-16654:
HK97 large terminase packaging complex
Method: single particle / : Hawkins DEDP, Antson AA

PDB-8cez:
HK97 Portal Protein In situ (prohead II)
Method: single particle / : Hawkins DEDP, Antson AA

PDB-8cfa:
HK97 Prohead II as part of a DNA packaging complex
Method: single particle / : Hawkins DEDP, Antson AA

EMDB-14088:
Icosahedral capsid of the phicrAss001 virion
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14089:
Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

EMDB-14090:
Unique vertex of the phicrAss001 virion with C5 symmetry imposed
Method: single particle / : Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more