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- EMDB-41160: CS4tt1p1_E3K local refinement for HCMV Trimer in complex with CS2... -
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Open data
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Basic information
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Title | CS4tt1p1_E3K local refinement for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab | |||||||||
![]() | CS4tt1p1_E3K local refinement map for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab | |||||||||
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![]() | Virus / glycoprotein / antibody / VIRAL PROTEIN | |||||||||
Biological species | ![]() ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.0 Å | |||||||||
![]() | Goldsmith JG / McLellan JS | |||||||||
Funding support | 1 items
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![]() | ![]() Title: HCMV neutralization by broad antibody targeting Authors: Zehner M / Goldsmith JG / McLellan JS / Klein F | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 89.8 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14.8 KB 14.8 KB | Display Display | ![]() |
Images | ![]() | 28.1 KB | ||
Others | ![]() ![]() ![]() | 156.6 MB 165 MB 165 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1018.8 KB | Display | ![]() |
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Full document | ![]() | 1018.4 KB | Display | |
Data in XML | ![]() | 14.6 KB | Display | |
Data in CIF | ![]() | 17.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | CS4tt1p1_E3K local refinement map for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.94 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Additional map: CS4tt1p1 E3K local refinement sharpened map for HCMV Trimer...
File | emd_41160_additional_1.map | ||||||||||||
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Annotation | CS4tt1p1_E3K local refinement sharpened map for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: CS4tt1p1 E3K local refinement half map A for HCMV...
File | emd_41160_half_map_1.map | ||||||||||||
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Annotation | CS4tt1p1_E3K local refinement half map A for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: CS4tt1p1 E3K local refinement half map B for HCMV...
File | emd_41160_half_map_2.map | ||||||||||||
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Annotation | CS4tt1p1_E3K local refinement half map B for HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Entire | Name: HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab |
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Components |
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-Supramolecule #1: HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Supramolecule | Name: HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab type: complex / ID: 1 / Parent: 0 |
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-Supramolecule #2: HCMV Trimer
Supramolecule | Name: HCMV Trimer / type: complex / ID: 2 / Parent: 1 |
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Source (natural) | Organism: ![]() ![]() |
-Supramolecule #3: CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
Supramolecule | Name: CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab / type: complex / ID: 3 / Parent: 1 |
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Source (natural) | Organism: ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 8 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | TFS GLACIOS |
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Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 49.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.2 µm / Nominal defocus min: 0.8 µm |
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Image processing
Startup model | Type of model: PDB ENTRY PDB model - PDB ID: |
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Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 3.0 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 376687 |
Initial angle assignment | Type: RANDOM ASSIGNMENT |
Final angle assignment | Type: MAXIMUM LIKELIHOOD |