[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 34,129 items for (author: na & m)

EMDB-45440:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

PDB-9cca:
Cryo-EM structure of a designed pyridoxal phosphate (PLP) synthase fused to a designed circumsporozoite protein antigen from Plasmodium falciparum (CSP-P1-CSP and CSP-P2-CSP)
Method: single particle / : Shi D, Ma R, Tang WK, Tolia NH

EMDB-45190:
Yersinia entomophaga holotoxin complex in prepore conformation
Method: single particle / : Low YS, Landsberg MJ

EMDB-45422:
Yersinia entomophaga holotoxin complex in pore conformation
Method: single particle / : Low YS, Landsberg MJ

EMDB-45423:
Yersinia entomophaga toxin complex TcA subunit
Method: single particle / : Low YS, Landsberg MJ

PDB-9c4k:
Yersinia entomophaga holotoxin complex in prepore conformation
Method: single particle / : Low YS, Landsberg MJ

PDB-9cbc:
Yersinia entomophaga holotoxin complex in pore conformation
Method: single particle / : Low YS, Landsberg MJ

EMDB-73147:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73148:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73149:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73151:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73152:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73154:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73155:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73156:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73157:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73158:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73159:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73160:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73161:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73162:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73163:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73164:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73165:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73166:
Constituent EM map: Focused refinement on BSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73167:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73169:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73170:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73171:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73172:
Constituent EM map: Focused refinement on BSol of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73177:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73180:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-54556:
Cerebellar GluA1/4 LBD tetramer (focused refinement)
Method: single particle / : Sengupta N, Scrutton A, Greger IH, Krieger JM

PDB-9s3z:
Cerebellar GluA1/4 LBD tetramer (focused refinement)
Method: single particle / : Sengupta N, Scrutton A, Greger IH, Krieger JM

EMDB-73297:
GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
Method: single particle / : Susorov D, Korostelev AA

EMDB-73311:
GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypg:
GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III
Method: single particle / : Susorov D, Korostelev AA

PDB-9ypw:
GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
Method: single particle / : Susorov D, Korostelev AA

EMDB-49912:
Cryo-EM structure of SARS-CoV-2 spike S2' trimer
Method: single particle / : Shi W, Jonaid G, Chen B

EMDB-49917:
Cryo-EM structure of SARS-CoV-2 spike S2' trimer (local map 1)
Method: single particle / : Shi W, Jonaid G, Chen B

EMDB-49918:
Cryo-EM structure of SARS-CoV-2 spike S2' trimer (local map 2)
Method: single particle / : Shi W, Jonaid G, Chen B

EMDB-49921:
Cryo-EM structure of SARS-CoV-2 spike S2' trimer (dimer of trimer)
Method: single particle / : Shi W, Jonaid G, Chen B

PDB-9nxy:
Cryo-EM structure of SARS-CoV-2 spike S2' trimer
Method: single particle / : Shi W, Jonaid G, Chen B

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-63799:
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Method: single particle / : Seki S, Litvin R, Bina D, Tanaka H, Miyata T, Namba K, Kurisu G, Polivka T, Fujii R

PDB-9mcc:
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Method: single particle / : Seki S, Litvin R, Bina D, Tanaka H, Miyata T, Namba K, Kurisu G, Polivka T, Fujii R

EMDB-74650:
Cryo-EM structure of Croatia 2023 H3N2 Influenza A hemagglutinin (HA) trimer
Method: single particle / : Kanai T, Gorman J, Shapiro L, Kwong PD

PDB-9zru:
Cryo-EM structure of Croatia 2023 H3N2 Influenza A hemagglutinin (HA) trimer
Method: single particle / : Kanai T, Gorman J

EMDB-51635:
P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody
Method: single particle / : Vizarraga D, Marcos Silva M, Martin Romero J, Guerra P, Fita I, Pinyol J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more