[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,157 items for (author: li & ye)

EMDB-55166:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

EMDB-55189:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (peptide)
Method: single particle / : Liang P, Zhang X

EMDB-56178:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (beta-barrel)
Method: single particle / : Liang P, Zhang X

EMDB-56179:
RAD51-dsDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

EMDB-56447:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54 N-terminus
Method: single particle / : Liang P, Zhang X

PDB-9srz:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

PDB-9ssl:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (peptide)
Method: single particle / : Liang P, Zhang X

PDB-9trl:
RAD51-ssDNA filament in complex with magnesium and ATP bound by the RAD54B N-terminus (beta-barrel)
Method: single particle / : Liang P, Zhang X

PDB-9trm:
RAD51-dsDNA filament in complex with calcium and ATP bound by the RAD54B N-terminus
Method: single particle / : Liang P, Zhang X

PDB-9tyy:
RAD51-ssDNA filament in complex with calcium and ATP bound by the RAD54 N-terminus
Method: single particle / : Liang P, Zhang X

EMDB-74399:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

PDB-9zld:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

EMDB-65635:
Cryo-EM structure of CpcL-PBS3
Method: single particle / : Mao ZY, Li ZH, Han GY

EMDB-65729:
Cryo-EM structure of CpcL-PBS2
Method: single particle / : Mao ZY, Li ZH, Han GY

EMDB-65883:
Cryo-EM structure of PSI-CpcL
Method: single particle / : Mao ZY, Li ZH, Han GY

PDB-9w4j:
Cryo-EM structure of CpcL-PBS3
Method: single particle / : Mao ZY, Li ZH, Han GY

PDB-9w7k:
Cryo-EM structure of CpcL-PBS2
Method: single particle / : Mao ZY, Li ZH, Han GY

PDB-9wd5:
Cryo-EM structure of PSI-CpcL
Method: single particle / : Mao ZY, Li ZH, Han GY

EMDB-73991:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-73992:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbj:
Cryo-EM structure of human apo mTORC2
Method: single particle / : Wranik M, Lee JM, Rogala KB

PDB-9zbk:
mTORC2 in complex with Akt1
Method: single particle / : Wranik M, Lee JM, Rogala KB

EMDB-53342:
Low resolution cryo-EM map of activin A bound to B52 Fabs
Method: single particle / : Pyeatt GL, Hyvonen M, Maia de Oliveira T, Jin Y, Miller D, Hunt J, Hill CS

EMDB-64869:
Cryo-EM structure of human TNFR1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

EMDB-64870:
Cryo-EM structure of human RIPK1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

EMDB-65047:
Helical assembly of TRADD death domain
Method: helical / : Liu J, Han Y

EMDB-65094:
Ternary complex of TNFR1-DD, TRADD-DD and RIPK1-DD
Method: single particle / : Liu J, Han Y, Zhao J, Gao J, Yuan J

PDB-9v9c:
Cryo-EM structure of human TNFR1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

PDB-9v9e:
Cryo-EM structure of human RIPK1 DD filament
Method: helical / : Zhao K, Liu JP, Liu C, Yuan JY

PDB-9vgd:
Helical assembly of TRADD death domain
Method: helical / : Liu J, Han Y

PDB-9vin:
Ternary complex of TNFR1-DD, TRADD-DD and RIPK1-DD
Method: single particle / : Liu J, Han Y, Zhao J, Gao J, Yuan J

EMDB-56682:
In situ ribosome structure from environmental sample of Pseudo-nitzschia
Method: subtomogram averaging / : Leisch N, Pyle E

EMDB-55321:
Cryo-EM structure of yeast telomerase holoenzyme
Method: single particle / : Hu H, Franco-Echevarria E, Nguyen THD, Ahsan B, Oluwole A, Peak-Chew S, Robinson CV

EMDB-55322:
The catalytic core of yeast telomerase holoenzyme
Method: single particle / : Hu H, Franco-Echevarria E, Nguyen THD, Ahsan B, Oluwole A, Peak-Chew S, Robinson CV

PDB-9swn:
Cryo-EM structure of yeast telomerase holoenzyme
Method: single particle / : Hu H, Franco-Echevarria E, Nguyen THD

PDB-9swo:
The catalytic core of yeast telomerase holoenzyme
Method: single particle / : Hu H, Franco-Echevarria E, Nguyen THD

EMDB-64791:
CryoEM structure of human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

PDB-9v5p:
Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

PDB-9uje:
Cryo-EM structure of SARS-CoV2 KP.3.1.1 spike protein
Method: single particle / : He MZ

EMDB-64935:
Lectin FRIL from Lablab purpureus complexed to Lewis X tetrasaccharide
Method: single particle / : Nguyen VHT, Chen X, Liu YM, Ma C

EMDB-64936:
Lectin FRIL from Lablab purpureus with self glycan
Method: single particle / : Nguyen VHT, Liu YM, Chen X, Ma C

EMDB-64937:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

EMDB-64938:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

PDB-9vbx:
Lectin FRIL from Lablab purpureus complexed to Lewis X tetrasaccharide
Method: single particle / : Nguyen VHT, Chen X, Liu YM, Ma C

PDB-9vby:
Lectin FRIL from Lablab purpureus with self glycan
Method: single particle / : Nguyen VHT, Liu YM, Chen X, Ma C

PDB-9vbz:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

PDB-9vc0:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

EMDB-50014:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Method: single particle / : Waltz F, Skaltsogiannis V, Giege P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more