[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 17,638 items for (author: jo & g)

PDB-9swa:
Adenovirus dodecahedron
Method: single particle / : Kabasakal BV, Buzas D, Bufton J, Berger-Schaffitzel C, Berger I

PDB-9sy5:
Engineering the ADDomer Nanoparticle Vaccine Scaffold for Improved Assembly and Enhanced Stability.
Method: single particle / : Balchin G, Berger-Schaffitzel C, Berger I

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-73285:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-73287:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75391:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75392:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qq:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qr:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp6:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp8:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-54181:
Consensus map of heptameric Rep40-dsDNA (ITR) in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54182:
Focused map of 3 subunits of Rep40 +dsDNA (ITR) in complex with ATPgS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54183:
Focused map of 4 subunits of heptameric Rep40-dsDNA (ITR) in complex with ATPgS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-54403:
Consensus map of Hexameric AAV2 Rep40-dsDNA (ITR) duplex complex in presence of ATPyS
Method: single particle / : Rouse SL, Bubeck D, Barritt JD, Xu V, Wake M

EMDB-56294:
Plasmodium falciparum gametocyte microtubule with 15 protofilaments determined in situ
Method: subtomogram averaging / : Ferreira JL

EMDB-55030:
Reduced bovine complex I in lipid nanodisc, NADH-active-Q10
Method: single particle / : Chung I, Hirst J

EMDB-55031:
Reduced bovine complex I in lipid nanodisc, NADH-active-altQ10
Method: single particle / : Chung I, Hirst J

EMDB-55032:
Reduced bovine complex I in lipid nanodisc, NADH-active-DDM
Method: single particle / : Chung I, Hirst J

EMDB-55033:
Reduced bovine complex I in lipid nanodisc, NADH-deactive
Method: single particle / : Chung I, Hirst J

EMDB-55034:
Reduced bovine complex I in lipid nanodisc, NADH-slack
Method: single particle / : Chung I, Hirst J

PDB-9smf:
Reduced bovine complex I in lipid nanodisc, NADH-active-Q10
Method: single particle / : Chung I, Hirst J

PDB-9smg:
Reduced bovine complex I in lipid nanodisc, NADH-active-altQ10
Method: single particle / : Chung I, Hirst J

PDB-9smh:
Reduced bovine complex I in lipid nanodisc, NADH-active-DDM
Method: single particle / : Chung I, Hirst J

PDB-9smi:
Reduced bovine complex I in lipid nanodisc, NADH-deactive
Method: single particle / : Chung I, Hirst J

EMDB-53029:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

PDB-9qdl:
CRYO-EM STRUCTURE OF THE YEAST RESPIRATORY COMPLEX II
Method: single particle / : Pinotsis N, Marechal A, Berry EA, Shu C

EMDB-53563:
Non-uniform refine map MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53564:
Focussed map (top) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53565:
Focussed map (bottom) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53566:
Focussed map (middle) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-70169:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70171:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3C-KO Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-70172:
Subtomogram Averaged Cryo-ET Structure of the 96-nm Axonemal Repeat in RSP3A-HA-BCCP Tetrahymena thermophila
Method: subtomogram averaging / : Bicka MB, Ghanaeian AG, Black CB, Joachimiak EJ, Osinka AO, Majhi SM, Konopka AK, Bulska EB, Bui HB, Wloga DW

EMDB-40774:
Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
Method: single particle / : Bhattacharjee S, Abaeva IS, Brown ZP, Arhab Y, Fallah H, Jeevan JC, Hellen CUT, Frank J, Pestova TV

PDB-8sup:
Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
Method: single particle / : Bhattacharjee S, Abaeva IS, Brown ZP, Arhab Y, Fallah H, Jeevan JC, Hellen CUT, Frank J, Pestova TV

EMDB-56971:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

EMDB-74146:
Cryo-EM Structure of Human STAT2-USP18-ISG15 Complex
Method: single particle / : Huynh KW, Yamaguchi M

EMDB-53571:
13 protofilament P. falciparum paclitaxel stabilised GDP microtubule
Method: helical / : Bangera M, Moores CA

EMDB-53572:
15 protofilament P. falciparum GMPCPP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9r4x:
13 protofilament P. falciparum paclitaxel stabilised GDP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9r4y:
15 protofilament P. falciparum GMPCPP microtubule
Method: helical / : Bangera M, Moores CA

PDB-9nj2:
N1 neuraminidase of influenza A/Vietnam/1203/2004 H5N1 in complex with four FNI9 Fab molecules
Method: single particle / : Errico JM, Dang HV, Snell G

EMDB-53884:
A53T alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53885:
A53T alpha-synuclein fibril - Type 2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53886:
Wild-type alpha-synuclein fibril - Type 1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53887:
Wild-type alpha-synuclein fibril - Type 3-1
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53888:
Wild-type alpha-synuclein fibril - Type 3-2
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53889:
Wild-type alpha-synuclein fibril - Type 4
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

EMDB-53890:
Wild-type alpha-synuclein fibril - Type 5
Method: helical / : So RWL, Frieg B, Schroeder GF, Watts JC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more