[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 18,677 items for (author: jo & g)


EMDB Unreleased entry

EMDB-52707:
Dark-state structure of human medium-wavelength cone opsin (OPN1MW)
Method: single particle / : Schmidt SL, Isaikina P


EMDB Unreleased entry

EMDB-51874:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

PDB-9h52:
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J


EMDB Unreleased entry

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G


EMDB Unreleased entry

EMDB-70204:
Cryo-EM Structure of YfdQ Reveals a Widespread Novel Family of Bacteriophage-Associated Proteins with Shell-Like Assemblies
Method: single particle / : Guzzo CR, Araujo GG, Merighi DGS

PDB-9o7m:
Cryo-EM Structure of YfdQ Reveals a Widespread Novel Family of Bacteriophage-Associated Proteins with Shell-Like Assemblies
Method: single particle / : Guzzo CR, Araujo GG, Merighi DGS


EMDB Unreleased entry

EMDB-71865:
Octacalcium phosphate-like precipitates
Method: electron tomography / : Anderson EA, Ludtke SJ


EMDB Unreleased entry

EMDB-71867:
Octacalcium phosphate-like precipitates
Method: electron tomography / : Anderson EA, Ludtke SJ


EMDB Unreleased entry

EMDB-71868:
Octacalcium phosphate-like precipitates
Method: electron tomography / : Anderson EA, Ludtke SJ


EMDB Unreleased entry

EMDB-72380:
Constitutive dimer GATOR1:SZT2 [1-1330] consensus map
Method: single particle / : Bayly-Jones C, Lupton CJ, Chang YG, Ellisdon AM


EMDB Unreleased entry

EMDB-72381:
The dimeric KICSTOR-GATOR1 supercomplex (constitutive GATOR1 dimer, SZT2 fragment)
Method: single particle / : Bayly-Jones C, Lupton CJ, Chang YG, Ellisdon AM

EMDB-54129:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-54130:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-54131:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)
Method: single particle / : Singh V, Shiriaev DI, Khawaja A, Rorbach J

EMDB-54163:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-57663:
human mitochondrial ribosome small subunit: Initiation complex with IF3 (State I2)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-57667:
Human mitochondrial small ribosomal subunit: Initiation complex with IF2 and IF3 (State I3)
Method: single particle / : Singh V, Khawaja A, Shiriaev D

EMDB-57668:
Human mitochondrial small ribosomal subunit: Initiation complex with IF2 and tRNA (state I4)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

EMDB-57669:
Human mitochondrial small ribosomal subunit: Assembly intermediate with IF3 and RBFA-out (state I1)
Method: single particle / : Singh V, Shiriaev D, Khawaja A, Rorbach J

PDB-9ror:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rot:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rov:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Inward conformation) (State M2)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

PDB-9rpf:
Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)
Method: single particle / : Khawaja A, Singh V, Shiriaev DI, Rorbach J

EMDB-71429:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71430:
PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71431:
3-OH-PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71432:
(S)-ketamine bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71433:
(S)-ketamine bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-71434:
Ligand-free kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa1:
PCP bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa2:
PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa3:
3-OH-PCP bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa4:
(S)-ketamine bound kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa5:
(S)-ketamine bound mu-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

PDB-9pa6:
Ligand-free kappa-opioid receptor in complex with Gi1
Method: single particle / : Jiang QR, Han JM, Fay JF, Che T

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

PDB-25if:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK

PDB-9v35:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v38:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3c:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3y:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v4d:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9wdi:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-54283:
Human UAP56-RNA - SAC3D1-PCID2-SEM1 complex, Map A
Method: single particle / : Hohmann U, Graf M, Plaschka C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more