[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 596 items for (author: hu & ym)

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46786:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46787:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46789:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), tail focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46791:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-47886:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, consensus map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47887:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, CARF domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47888:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, deaminase domain focus refined map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-47890:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-48116:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9ebt:
CRISPR-associated deaminase Cad1 in cA4 bound form, symmetry expanded dimer, refined against a composite map
Method: single particle / : Zhao Y, Whyms CT, Li H

PDB-9eka:
CRISPR-associated deaminase Cad1 in Apo form
Method: single particle / : Zhao Y, Whyms CT, Li H

EMDB-54169:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54170:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54171:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54173:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54175:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpr:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rps:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpt:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpw:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rqi:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-48405:
CRISPR-associated deaminase Cad1 in cA4 bound in hexamer form refined against the consensus map
Method: single particle / : Li H, Zhao Y, Whyms C

PDB-9mmw:
CRISPR-associated deaminase Cad1 in cA4 bound in hexamer form refined against the consensus map
Method: single particle / : Li H, Zhao Y, Whyms C

EMDB-52655:
Cryo-electron tomogram of the S-layer coated tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing flagella and intracellular vesicles) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52667:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing a chemosensory array) grown in mice
Method: electron tomography / : Wimmer B, Medalia O, Schnupf P

EMDB-52668:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing intracellular filaments) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52669:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing intracellular plate-like structures) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52670:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing intracellular vesicles) grown in mice and of undecorated extracellular vesicle
Method: electron tomography / : Wimmer B, Medalia O, Schnupf P

EMDB-52671:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring) grown in mice and of decorated extracellular vesicle
Method: electron tomography / : Wimmer B, Medalia O, Schnupf P

EMDB-52673:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing intracellular plate-like structures and a chemosensory array) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52674:
Cryo-electron tomogram of the cell body of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing intracellular filaments) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52675:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring) grown in mice and of undecorated extracellular vesicles
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52676:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (stage 3 intracellular offspring) grown in mice
Method: electron tomography / : Wimmer B, Medalia O, Schnupf P

EMDB-52677:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (stage 4 filament) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52678:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (stage 5 filament) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52679:
Cryo-electron tomogram of the hair-like layer coated distal end of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52680:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (stage 3 intracellular offspring) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52682:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (stage 5 intracellular offspring) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52683:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-mouse-NL (transitional stage 4 intracellular offspring) grown in mice
Method: electron tomography / : Wimmer B, Medalia O

EMDB-52684:
Cryo-electron tomogram of the S-layer coated tip of Candidatus Arthromitus sp. SFB-rat-Yit (intracellular offspring containing intracellular vesicles) grown in rats
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52685:
Cryo-electron tomogram of the S-layer coated tip of Candidatus Arthromitus sp. SFB-mouse-NL (stage 1 intracellular offspring) grown in mice
Method: electron tomography / : Cruz AR, Teo TH, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52687:
Cryo-electron tomogram of the S-layer coated tip of Candidatus Arthromitus sp. SFB-mouse-NL (intracellular offspring containing flagella) grown in mice
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52688:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (stage 3 intracellular offspring) grown in rats
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52689:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (intracellular offspring containing flagella and intracellular filaments) grown in rats and of decorated extracellular vesicles
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52690:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (unidentified stage intracellular offspring) grown in rats
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52691:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (intracellular offspring containing intracellular plate-like structures) grown in rats
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52692:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (intracellular offspring containing flagella and a chemosensory array) grown in rats
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52693:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (intracellular offspring containing intracellular filaments and vesicles) grown in rats and of extracellular vesicles
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

EMDB-52694:
Cryo-electron tomogram of the tip of Candidatus Arthromitus sp. SFB-rat-Yit (intracellular offspring containing intracellular plate-like structures) grown in rats
Method: electron tomography / : Cruz AR, Teo TH, Pehau-Arnaudet G, Winter JM, Gazi A, Sartori-Rupp A, Schnupf P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more