[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 201 items for (author: gut & rt)

EMDB-49494:
Thermothelomyces thermophilus SAM complex closed conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-49495:
Thermothelomyces thermophilus SAM complex open conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-49496:
Thermothelomyces thermophilus SAM complex bound to darobactin A
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk6:
Thermothelomyces thermophilus SAM complex closed conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk7:
Thermothelomyces thermophilus SAM complex open conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk8:
Thermothelomyces thermophilus SAM complex bound to darobactin A
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-47366:
CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei D-hydrazino-Lysine analog at 2.3 Angstrom resolution
Method: single particle / : Duhoo Y, Desfosses A, Gutsche I, Doukov TI, Berkowitz DB

PDB-9e0q:
CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei D-hydrazino-Lysine analog at 2.3 Angstrom resolution
Method: single particle / : Duhoo Y, Desfosses A, Gutsche I, Doukov TI, Berkowitz DB

EMDB-62471:
Cryo-EM structure of PsCas9-sgRNA binary complex
Method: single particle / : Shen PP, Lu XY, Huang JW, Chen CC, Gut RT

EMDB-47362:
CryoEM structure of holoenzyme of inducible Lysine decarboxylase from Hafnia alvei holoenzyme at 2.19 Angstrom resolution
Method: single particle / : Duhoo Y, Desfosses A, Gutsche I, Doukov TI, Berkowitz DB

EMDB-47364:
CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei L-hydrazino-Lysine analog at 2.04 Angstrom resolution
Method: single particle / : Duhoo Y, Desfosses A, Gutsche I, Doukov TI, Berkowitz DB

PDB-9e0m:
CryoEM structure of holoenzyme of inducible Lysine decarboxylase from Hafnia alvei holoenzyme at 2.19 Angstrom resolution
Method: single particle / : Duhoo Y, Desfosses A, Gutsche I, Doukov TI, Berkowitz DB

PDB-9e0o:
CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei L-hydrazino-Lysine analog at 2.04 Angstrom resolution
Method: single particle / : Duhoo Y, Desfosses A, Gutsche I, Doukov TI, Berkowitz DB

EMDB-44199:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-44247:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

PDB-9b54:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

PDB-9b65:
Biased agonist bound CB1-Gi structure
Method: single particle / : Rangari VA, O'Brien ES, Kobilka BK, Krishna Kumar K, Majumdar S

EMDB-19766:
Cryo-EM structure of SKP1-FBXO22 in complex with a BACH1 BTB dimer at 3.2A resolution
Method: single particle / : Khoshouei M, Goretzki B

EMDB-19768:
Cryo-EM structure of SKP1-FBXO22
Method: single particle / : Khoshouei M

PDB-8s7d:
Cryo-EM structure of SKP1-FBXO22 in complex with a BACH1 BTB dimer at 3.2A resolution
Method: single particle / : Khoshouei M, Goretzki B

PDB-8s7e:
Cryo-EM structure of SKP1-FBXO22
Method: single particle / : Khoshouei M

EMDB-43148:
Cryo-EM structure of human monoclonal antibody C7 targeting IT4VAR22 CIDRa1.7 (PfEMP1 A)
Method: single particle / : Raghavan SSR, Ward AB

EMDB-43149:
Cryo-EM structure of human monoclonal antibody C74 targeting IT4VAR22 CIDRa1.7
Method: single particle / : Raghavan SSR, Ward AB

EMDB-43150:
Human monoclonal antibody C7 targeting HB3VAR03 (PfEMP1 A)
Method: single particle / : Raghavan SSR, Ward AB

EMDB-44539:
Cryo-EM structure of human monoclonal antibody C74 targeting PFD1235w (CIDRa1.6) PfEMP1
Method: single particle / : Raghavan SSR, Ward AB

PDB-8vdf:
Cryo-EM structure of human monoclonal antibody C7 targeting IT4VAR22 CIDRa1.7 (PfEMP1 A)
Method: single particle / : Raghavan SSR, Ward AB

PDB-8vdg:
Cryo-EM structure of human monoclonal antibody C74 targeting IT4VAR22 CIDRa1.7
Method: single particle / : Raghavan SSR, Ward AB

PDB-9bhb:
Cryo-EM structure of human monoclonal antibody C74 targeting PFD1235w (CIDRa1.6) PfEMP1
Method: single particle / : Raghavan SSR, Ward AB

EMDB-18399:
SARS-CoV-2 Spike in complex with the neutralizing antibody Cv2.3194
Method: single particle / : Fernandez I, Rey FA, Guardado-Calvo P

EMDB-17659:
ACAD9-WT in complex with ECSIT-CTER
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

EMDB-17660:
Cryo-EM structure of human ACAD9-S191A
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

EMDB-17661:
ACAD9 homodimer WT
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

PDB-8phe:
ACAD9-WT in complex with ECSIT-CTER
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

PDB-8phf:
Cryo-EM structure of human ACAD9-S191A
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

EMDB-18941:
SARS-CoV-2 S (Spike) protein (BA.1) in complex with VHH Ma16B06 (sub-volume of two adjacent RBD-VHH modules)
Method: single particle / : Guttler T, Aksu M, Gorlich D

EMDB-17804:
Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

EMDB-17805:
MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

PDB-8ppk:
Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

PDB-8ppl:
MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

EMDB-16894:
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

EMDB-16896:
39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

EMDB-16897:
55S human mitochondrial ribosome with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

EMDB-16898:
28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

EMDB-16899:
39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

PDB-8oin:
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

PDB-8oiq:
39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

PDB-8oir:
55S human mitochondrial ribosome with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

PDB-8ois:
28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

PDB-8oit:
39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Method: single particle / : Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N

EMDB-16232:
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Method: single particle / : Jaskolowski M, Jomaa A, Gamerdinger M, Shrestha S, Leibundgut M, Deuerling E, Ban N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more