[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 113 items for (author: grob & p)

EMDB-48548:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48549:
SARS-CoV-2 S2 monomer in complex with NICA01B-1113 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48550:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr1:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr2:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-48262:
Dunaliella salina PSI-LHCI-TIDI1 supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

EMDB-48264:
Dunaliella tertiolecta PSI-LHCI-TIDI1 supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

EMDB-48265:
Dunaliella salina PSI-LHCI supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

EMDB-48266:
Dunaliella tertiolecta PSI-LHCI supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

PDB-9mgw:
Dunaliella salina PSI-LHCI-TIDI1 supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

PDB-9mgz:
Dunaliella tertiolecta PSI-LHCI-TIDI1 supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

PDB-9mh0:
Dunaliella salina PSI-LHCI supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

PDB-9mh1:
Dunaliella tertiolecta PSI-LHCI supercomplex
Method: single particle / : Liu HW, Khera R, Iwai M, Merchant SS

EMDB-48071:
Cryo-EM structure of Human RNA polymerase II Elongation Complex in an Intermediate Translocation State
Method: single particle / : Florez Ariza A, Lue N, Nogales E

EMDB-48073:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the absence of nucleotide
Method: single particle / : Florez Ariza A, Lue N, Nogales E

EMDB-48074:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to an apo RECQL5 helicase (RECQL5 IRI Module focused-classified)
Method: single particle / : Florez Ariza A, Lue N, Nogales E

EMDB-48075:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the presence of AMPPNP
Method: single particle / : Florez Ariza A, Lue N, Nogales E

EMDB-48076:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the presence of ADP
Method: single particle / : Florez Ariza A, Lue N, Nogales E

PDB-9ehz:
Cryo-EM structure of Human RNA polymerase II Elongation Complex in an Intermediate Translocation State
Method: single particle / : Florez Ariza A, Lue N, Nogales E

PDB-9ei1:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the absence of nucleotide
Method: single particle / : Florez Ariza A, Lue N, Nogales E

PDB-9ei2:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to an apo RECQL5 helicase (RECQL5 IRI Module focused-classified)
Method: single particle / : Florez Ariza A, Lue N, Nogales E

PDB-9ei3:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the presence of AMPPNP
Method: single particle / : Florez Ariza A, Lue N, Nogales E

PDB-9ei4:
Cryo-EM structure of Human RNA polymerase II Elongation Complex bound to the RECQL5 helicase in the presence of ADP
Method: single particle / : Florez Ariza A, Lue N, Nogales E

EMDB-43560:
Cryo-EM structure of a type II ZorAB complex from Sulfuricurvum kujiense
Method: single particle / : Deme JC, Lea SM

EMDB-43561:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, consensus map
Method: single particle / : Deme JC, Lea SM

EMDB-43562:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, PG-binding domain focused map
Method: single particle / : Deme JC, Lea SM

EMDB-43563:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3, composite map
Method: single particle / : Deme JC, Lea SM

PDB-8vvi:
Cryo-EM structure of a type II ZorAB complex from Sulfuricurvum kujiense
Method: single particle / : Deme JC, Lea SM

PDB-8vvn:
Cryo-EM structure of a type I ZorAB complex from Shewanella sp. strain ANA-3
Method: single particle / : Deme JC, Lea SM

EMDB-43893:
Structure of the auto-fluorescent membrane-bound red body organelle from Nannochloropsis oceanica in situ
Method: electron tomography / : Grob P, Danielle J, Gee CW

EMDB-40554:
Cryo-EM Consensus map of the E. coli transcription-translation complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-40178:
Cryo-EM composited map of the E. coli transcription-translation complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-29212:
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex harboring a terminal mismatch
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-29213:
Cryo-EM structure of E. coli RNA polymerase Elongation complex in the Transcription-Translation Complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-29214:
Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

PDB-8fix:
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex harboring a terminal mismatch
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

PDB-8fiy:
Cryo-EM structure of E. coli RNA polymerase Elongation complex in the Transcription-Translation Complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

PDB-8fiz:
Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-27112:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (global refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

EMDB-27113:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

PDB-8d0z:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-25107:
Lassa virus glycoprotein construct(Josiah GPCysR4) recovered from GPC-I53-50 nanoparticle by localized reconstruction
Method: single particle / : Antanasijevic A, Brouwer PJM

EMDB-25108:
I53-50 nanoparticle core reconstructed from GPC-I53-50NP by focused refinement
Method: single particle / : Antanasijevic A, Brouwer PJM

EMDB-25109:
Lassa virus glycoprotein construct (Josiah GPC-I53-50A) in complex with LAVA01 antibody
Method: single particle / : Antanasijevic A, Brouwer PJM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more