[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: fernandez-leiro & r)

EMDB-18181:
Early closed conformation of the g-tubulin ring complex
Method: single particle / : Llorca O, Serna M, Fernandez-Leiro R

PDB-8q62:
Early closed conformation of the g-tubulin ring complex
Method: single particle / : Llorca O, Serna M, Fernandez-Leiro R

EMDB-15414:
Vaccinia C16 N-terminal domains
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

EMDB-15415:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

EMDB-15416:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-8ag3:
Vaccinia C16 N-terminal domains
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-8ag4:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-8ag5:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-7p6x:
Cryo-Em structure of the hexameric RUVBL1-RUVBL2 in complex with ZNHIT2
Method: single particle / : Llorca O, Serna M, Fernandez-Leiro R

EMDB-11791:
MutS in Scanning state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D

EMDB-11792:
MutS in mismatch bound state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D

EMDB-11793:
MutS in Intermediate state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D

EMDB-11794:
MutS-MutL in clamp state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D

EMDB-11795:
MutS-MutL in clamp state (kinked clamp domain)
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D

PDB-7ai5:
MutS in Scanning state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D, Sixma TK, Lamers MH

PDB-7ai6:
MutS in mismatch bound state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D, Sixma TK, Lamers MH

PDB-7ai7:
MutS in Intermediate state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D, Sixma TK, Lamers MH

PDB-7aib:
MutS-MutL in clamp state
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D, Sixma TK, Lamers MH

PDB-7aic:
MutS-MutL in clamp state (kinked clamp domain)
Method: single particle / : Fernandez-Leiro R, Bhairosing-Kok D, Sixma TK, Lamers MH

EMDB-11888:
Recombinant human gTuRC
Method: single particle / : Serna M, Fernandez-Leiro R

PDB-7as4:
Recombinant human gTuRC
Method: single particle / : Serna M, Fernandez-Leiro R, Llorca O

EMDB-11788:
Cryo-EM structure of the RUVBL1-RUVBL2-DHX34 complex
Method: single particle / : Lopez-Perrote A, Rodriguez CF, Llorca O

EMDB-11789:
RUVBL1-RUVBL2 heterohexameric ring after binding of RNA helicase DHX34
Method: single particle / : Lopez-Perrote A, Rodriguez CF, Llorca O

PDB-7aho:
RUVBL1-RUVBL2 heterohexameric ring after binding of RNA helicase DHX34
Method: single particle / : Lopez-Perrote A, Rodriguez CF, Llorca O

EMDB-10109:
Structure of beta-Galactosidase from Thermotoga maritima
Method: single particle / : Miguez-Amil S, Jimenez-Ortega E

PDB-6s6z:
Structure of beta-Galactosidase from Thermotoga maritima
Method: single particle / : Miguez-Amil S, Jimenez-Ortega E, Ramirez Escudero M, Sanz-Aparicio J, Fernandez-Leiro R

EMDB-10186:
Structure of the ESX-3 core complex
Method: single particle / : Rivera-Calzada A, Famelis N, Geibel S, Llorca O

EMDB-10187:
Structure of protomer 1 of the ESX-3 core complex
Method: single particle / : Rivera-Calzada A, Famelis N, Geibel S, Llorca O

EMDB-10188:
Structure of EccB3 dimer from the ESX-3 core complex
Method: single particle / : Rivera-Calzada A, Famelis N, Geibel S, Llorca O

EMDB-10189:
ESX-3 core complex centred at the cytoplasmic region, conformation 1.
Method: single particle / : Rivera-Calzada A, Famelis N, Geibel S, Llorca O

EMDB-10190:
ESX-3 core complex centred at the cytoplasmic region, conformation 2.
Method: single particle / : Rivera-Calzada A, Famelis N, Geibel S, Llorca O

EMDB-10191:
Structure of protomer 2 of the ESX-3 core complex
Method: single particle / : Rivera-Calzada A, Famelis N, Geibel S, Llorca O

PDB-6sgw:
Structure of the ESX-3 core complex
Method: single particle / : Famelis N, Rivera-Calzada A, Llorca O, Geibel S

PDB-6sgx:
Structure of protomer 1 of the ESX-3 core complex
Method: single particle / : Famelis N, Rivera-Calzada A, Llorca O, Geibel S

PDB-6sgy:
Structure of EccB3 dimer from the ESX-3 core complex
Method: single particle / : Famelis N, Rivera-Calzada A, Llorca O, Geibel S

PDB-6sgz:
Structure of protomer 2 of the ESX-3 core complex
Method: single particle / : Famelis N, Rivera-Calzada A, Llorca O, Geibel S

EMDB-4605:
Human Phenylalanine Hydroxylase (hPAH) apo structure
Method: single particle / : Alcorlo-Pages M, Flydal MI, Martinez-Caballero S, Martinez A, Hermoso JA, Fernandez-Leiro R

EMDB-4553:
Truncated human R2TP complex, structure 4 (ADP-empty)
Method: single particle / : Munoz-Hernandez H, Rodriguez CF

PDB-6qi9:
Truncated human R2TP complex, structure 4 (ADP-empty)
Method: single particle / : Munoz-Hernandez H, Rodriguez CF, Llorca O

EMDB-4552:
Truncated human R2TP complex, structure 3 (ADP-filled)
Method: single particle / : Munoz-Hernandez H, Rodriguez CF

EMDB-4554:
Truncated human R2TP complex, structure 1
Method: single particle / : Munoz-Hernandez H, Rodriguez CF, Llorca O

EMDB-4555:
Truncated human R2TP complex, structure 2
Method: single particle / : Munoz-Hernandez H, Rodriguez CF, Llorca O

EMDB-4556:
Truncated human R2TP complex, structure 5 (ADP-filled)
Method: single particle / : Munoz-Hernandez H, Rodriguez CF, Llorca O

EMDB-4557:
Truncated human R2TP complex, structure 6 (ADP-empty)
Method: single particle / : Munoz-Hernandez H, Rodriguez CF, Llorca O

PDB-6qi8:
Truncated human R2TP complex, structure 3 (ADP-filled)
Method: single particle / : Munoz-Hernandez H, Rodriguez CF, Llorca O

EMDB-4141:
Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode
Method: single particle / : Fernandez-Leiro R, Conrad J

EMDB-4142:
Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode
Method: single particle / : Fernandez-Leiro R, Conrad J, Scheres SHW, Lamers MH

PDB-5m1s:
Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode
Method: single particle / : Fernandez-Leiro R, Conrad J, Scheres SHW, Lamers MH

EMDB-8090:
Cryo-EM structure of GluA2/3 AMPA receptor heterotetramer (model I)
Method: single particle / : Herguedas B, Garcia-Nafria J

EMDB-8091:
Cryo-EM structure of GluA2/3 AMPA receptor heterotetramer (model II)
Method: single particle / : Herguedas B, Garcia-Nafria J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more