[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 98 items for (author: bolognesi & m)

EMDB-53223:
The structure of the DNA-binding domain of Nuclear Factor 1 X bound to NFI consensus DNA sequence
Method: helical / : Tiberi M, Nardini M, Chaves-Sanjuan A, Gourlay LJ, Bonnet DMV

PDB-9qky:
The structure of the DNA-binding domain of Nuclear Factor 1 X bound to NFI consensus DNA sequence
Method: helical / : Tiberi M, Nardini M, Chaves-Sanjuan A, Gourlay LJ, Bonnet DMV

EMDB-51168:
MtUvrA2 bound to endogenous E. coli DNA at low resolution
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51169:
MtUvrA2 dimer empty
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51170:
MtUvrA2UvrB bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51171:
MtUvrA2UvrB2 bound to damaged oligonucleotide (half 1)
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51172:
MtUvrA2UvrB2 bound to damaged oligonucleotide (half 2)
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51173:
Composite map of MtUvrA2UvrB2-DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51174:
MtUvrA2 bound to endogenous E. coli DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51220:
Consensus map of MtUvrA2UvrB2-DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga2:
MtUvrA2 dimer empty
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga3:
MtUvrA2UvrB bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga4:
MtUvrA2UvrB2 bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga5:
MtUvrA2 bound to endogenous E. coli DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-19826:
MucR dodecameric oligomerization domain
Method: single particle / : Chaves-Sanjuan A, Del Cont-Bernard A, Bolognesi M, Nardini M

EMDB-50272:
Additional cryo-EM structure of cardiac amyloid AL59 - mixed polymorph
Method: helical / : Schulte T, Speranzini V, Chaves-Sanjuan A, Milazzo M, Ricagno S

PDB-9fac:
Additional cryo-EM structure of cardiac amyloid AL59 - mixed polymorph
Method: helical / : Schulte T, Speranzini V, Chaves-Sanjuan A, Milazzo M, Ricagno S

EMDB-16860:
Ivabradine bound to HCN4 channel
Method: single particle / : Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A

PDB-8ofi:
Ivabradine bound to HCN4 channel
Method: single particle / : Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A

EMDB-50271:
Additional cryo-EM structure of cardiac amyloid AL59 - bent polymorph
Method: helical / : Schulte T, Speranzini V, Chaves-Sanjuan A, Milazzo M, Ricagno S

EMDB-51031:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI
Method: electron tomography / : Sicking K, Fernandez-Busnadiego R, Ricagno S

EMDB-51032:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI
Method: electron tomography / : Sicking K, Fernandez-Busnadiego R, Ricagno S

EMDB-51033:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI
Method: electron tomography / : Sicking K, Fernandez-Busnadiego R, Ricagno S

EMDB-51038:
Cryo-electron tomogram of AL59 amyloids interacting with collagen VI
Method: electron tomography / : Sicking K, Fernandez-Busnadiego R, Ricagno S

EMDB-18973:
Cryo-EM structure of Human SHMT1
Method: single particle / : Spizzichino S, Marabelli C, Bharadwaj A, Jakobi AJ, Chaves-Sanjuan A, Giardina G, Bolognesi M, Cutruzzola F

PDB-8r7h:
Cryo-EM structure of Human SHMT1
Method: single particle / : Spizzichino S, Marabelli C, Bharadwaj A, Jakobi AJ, Chaves-Sanjuan A, Giardina G, Bolognesi M, Cutruzzola F

EMDB-18689:
Maps of Collagen VI half- and full-beads
Method: single particle / : Schulte T, Speranzini V, Chaves-Sanjuan A, Ricagno S

EMDB-50270:
Cryo-EM structure of cardiac collagen-associated amyloid AL59
Method: helical / : Schulte T, Speranzini V, Chaves-Sanjuan A, Milazzo M, Ricagno S

PDB-9faa:
Cryo-EM structure of cardiac collagen-associated amyloid AL59
Method: helical / : Schulte T, Speranzini V, Chaves-Sanjuan A, Milazzo M, Ricagno S

EMDB-16931:
NAPE-PLD dimer bound to a nanodisc
Method: single particle / : Chaves-Sanjuan A, Garau G, Bolognesi M

EMDB-16932:
NAPE-PLD bound to a nanodisc
Method: single particle / : Chaves-Sanjuan A, Garau G, Bolognesi M

EMDB-50423:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50424:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50425:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein, with two RBD up and one RBD down. Single chain fragment scFv76 bound to the two RBD up
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50426:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein, with two RBD up and one RBD down.
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

PDB-9fgt:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50419:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50427:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50428:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50429:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein, with two RBD up and one down. The single chain fragment scFv76-77 is bound to the two RBD up.
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

PDB-9fgu:
SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50417:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50420:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50421:
SARS-CoV-2 (wuhan variant) Spike protein, with three RBD up, in complex with one molecule of single chain fragment scFv41N
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50422:
SARS-CoV-2 (wuhan variant) Spike protein, with two RBD up and one RBD down. Single chain fragment scFv41N bound to one RDB up and the RBD down
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

PDB-9fgs:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-50418:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

PDB-9fgr:
SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement)
Method: single particle / : Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M

EMDB-16780:
CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.
Method: helical / : Puri S, Schulte T, Chaves-Sanjuan A, Ricagno S

PDB-8cpe:
CryoEM structure of AL55 amyloid fibrils extracted from the kidney of an AL amyloidosis patient.
Method: helical / : Puri S, Schulte T, Chaves-Sanjuan A, Ricagno S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more