[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,371 items for (author: berg & a)

EMDB-56534:
Cryo-EM structure of human TMEM45A with a bound 2-Hydroxypalmitate
Method: single particle / : Grieben M, Inderhees J

PDB-28hy:
Cryo-EM structure of human TMEM45A with a bound 2-Hydroxypalmitate
Method: single particle / : Grieben M, Inderhees J

EMDB-78435:
Plasmodium falciparum 17-PF subpellicular microtubule
Method: single particle / : Zeng J, Zhang R

EMDB-78436:
Plasmodium falciparum 18-PF subpellicular microtubule
Method: single particle / : Zeng J, Zhang R

EMDB-78437:
Plasmodium falciparum 17-PF subpellicular microtubule associated with human hemoglobin (local refined map)
Method: single particle / : Zeng J, Zhang R

EMDB-78438:
Plasmodium falciparum 17-PF subpellicular microtubule associated with human hemoglobin
Method: single particle / : Zeng J, Zhang R

EMDB-56439:
Cryo-EM structure of human TMEM45B with a bound GM3 (18:1;O2/24:1)
Method: single particle / : Grieben M, Inderhees J

PDB-9tyv:
Cryo-EM structure of human TMEM45B with a bound GM3 (18:1;O2/24:1)
Method: single particle / : Grieben M, Inderhees J

EMDB-56367:
Cryo-electron tomogram acquired on a cryo-FIB lamella of two adjacent NIH 3T3 cells.
Method: electron tomography / : Gerard SF, Cheng DCW, Toro-Nahuelpan M, Mahamid J, Diz-Munoz A

EMDB-57959:
Cryo-EM structure of the E. coli DRT10 RT-ncRNA complex, Eco1 subtype
Method: single particle / : He Q, Ramirez J

EMDB-58651:
Human wild-type LONP1 bound to PZL-26
Method: single particle / : Pardo-Hernandez C, Green J, Gustafsson CM

PDB-31sy:
Human wild-type LONP1 bound to PZL-26
Method: single particle / : Pardo-Hernandez C, Green J, Gustafsson CM

EMDB-58360:
Human tRNA ligase complex
Method: single particle / : Pfleiderer MM, Jinek M

PDB-31fw:
Human tRNA ligase complex
Method: single particle / : Pfleiderer MM, Jinek M

EMDB-78853:
RNA polymerase ribozyme 85h34 replication complex, subclass 7 structure
Method: single particle / : Strutzenberg TS, Lyumkis D

EMDB-59152:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor IID432
Method: single particle / : Schenk A, Deniston C

PDB-32to:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor IID432
Method: single particle / : Schenk A, Deniston C

EMDB-72497:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (composite map from PHENIX based on consensus and local refinement maps from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

PDB-9y4t:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (composite map from PHENIX based on consensus and local refinement maps from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-53832:
Structure of human NHE6.1 bound to PIP2 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8n:
Structure of human NHE6.1 bound to PIP2 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-53831:
Structure of human NHE6.1 bound to PIP2
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8m:
Structure of human NHE6.1 bound to PIP2
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-53828:
Structure of human NHE9 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8k:
Structure of human NHE9 (core-TM domain)
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-53827:
Structure of human NHE9
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8j:
Structure of human NHE9
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-53829:
Structure of human NHE6.0
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

PDB-9r8l:
Structure of human NHE6.0
Method: single particle / : Hansen JS, Pike ACW, Chi G, Wolf G, Ingles-Prieto A, Tranberg-Jensen J, Ye M, Speedman D, Goericke F, Sauer DB, Beck H, Superti-Furga G, Huber KVM

EMDB-72356:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened AHD1 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72403:
Alternative NBD1-binding geometry in channel-formed, ATP-bound, VX809-bound, T2a-nanobody-bound wild-type human CFTR (Composite map from PHENIX)
Method: single particle / : Hunt JF, Paige AS, Govaerts C, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Overtus M, Rich Z

EMDB-72491:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened WalkerB2 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72492:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened AHD2 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72493:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened CORE2 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72494:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened WalkerB1 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z, Baranwal J

EMDB-72495:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened CORE1 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72496:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR ( Consensus map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-78851:
RNA polymerase ribozyme 85h34 replication complex, consensus structure.
Method: single particle / : Strutzenberg TS, Lyumkis D

EMDB-78852:
RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure.
Method: single particle / : Strutzenberg TS, Lyumkis D

EMDB-54816:
Monomeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

EMDB-54817:
Dimeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

PDB-9sf8:
Monomeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

PDB-9sf9:
Dimeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

EMDB-75268:
Native flagellar filament from Leptospira interrogans
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

EMDB-75269:
Native flagellar filament from Leptospira interrogans flaB1- KO mutant strain
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

EMDB-75270:
Native flagellar filament from Leptospira biflexa
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

PDB-10lk:
Native flagellar filament from Leptospira interrogans
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

PDB-10ll:
Native flagellar filament from Leptospira interrogans flaB1- KO mutant strain
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

PDB-10lm:
Native flagellar filament from Leptospira biflexa
Method: single particle / : Brady MR, San Martin F, Sindelar CV, Buschiazzo A

EMDB-56520:
Cryo-EM map of SKM-70S complex State 2 (Accommodating A-tRNA)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more