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8JOK
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BU of 8jok by Molmil
Crystal structure of V30L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-07
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8JQW
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BU of 8jqw by Molmil
Crystal structure of V30I mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-15
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
8JNU
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BU of 8jnu by Molmil
Crystal structure of V30G mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-06
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
1WO1
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BU of 1wo1 by Molmil
Tachyplesin I in dodecylphosphocholine micelles
Descriptor: Tachyplesin I
Authors:Mizuguchi, M, Kamata, S, Kawabata, S, Fujitani, N, Kawano, K.
Deposit date:2004-08-11
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of tachyplesin I in dodecylphosphocholine
to be published
1WO0
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BU of 1wo0 by Molmil
Solution structure of tachyplesin I in H2O
Descriptor: Tachyplesin I
Authors:Mizuguchi, M, Kamata, S, Kawabata, S, Fujitani, N, Kawano, K.
Deposit date:2004-08-11
Release date:2005-08-09
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of tachyplesin I in H2O
to be published
4BWS
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BU of 4bws by Molmil
Crystal structure of the heterotrimer of PQBP1, U5-15kD and U5-52kD.
Descriptor: CD2 ANTIGEN CYTOPLASMIC TAIL-BINDING PROTEIN 2, POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4BWQ
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BU of 4bwq by Molmil
Crystal structure of U5-15kD in a complex with PQBP1
Descriptor: POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
Deposit date:2013-07-04
Release date:2014-04-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
4CDO
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BU of 4cdo by Molmil
Crystal structure of PQBP1 bound to spliceosomal U5-15kD
Descriptor: THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN
Authors:Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Nabeshima, Y, Okazawa, H.
Deposit date:2013-11-05
Release date:2014-04-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
7W9Q
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BU of 7w9q by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-14
Descriptor: (2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, CALCIUM ION, Transthyretin
Authors:Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-12-10
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
7W9R
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BU of 7w9r by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-18
Descriptor: (2~{R})-2-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Transthyretin
Authors:Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
Deposit date:2021-12-10
Release date:2022-12-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
8I75
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BU of 8i75 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structural and mutational analyses of decarboxylated osteocalcin provide insight into its adiponectin-inducing activity.
Febs Lett., 597, 2023
8I76
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BU of 8i76 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0 without glycerol
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (1.381 Å)
Cite:Structural and mutational analyses of decarboxylated osteocalcin provide insight into its adiponectin-inducing activity.
Febs Lett., 597, 2023
8I74
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BU of 8i74 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 8.5
Descriptor: Osteocalcin
Authors:Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
Deposit date:2023-01-31
Release date:2024-01-31
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural and mutational analyses of decarboxylated osteocalcin provide insight into its adiponectin-inducing activity.
Febs Lett., 597, 2023
5FVL
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BU of 5fvl by Molmil
Crystal structure of Vps4-Vps20 complex from S.cerevisiae
Descriptor: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4
Authors:Kojima, R, Obita, T, Onoue, K, Mizuguchi, M.
Deposit date:2016-02-09
Release date:2016-04-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.973 Å)
Cite:Structural Fine-Tuning of Mit Interacting Motif 2 (Mim2) and Allosteric Regulation of Escrt-III by Vps4 in Yeast.
J.Mol.Biol., 428, 2016
2MDB
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BU of 2mdb by Molmil
Tachyplesin I in the presence of lipopolysaccharide
Descriptor: Tachyplesin-1
Authors:Kushibiki, T, Kamiya, M, Aizawa, T, Kumaki, Y, Kikukawa, T, Mizuguchi, M, Demura, M, Kawabata, S.I, Kawano, K.
Deposit date:2013-09-09
Release date:2014-02-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.
Biochim.Biophys.Acta, 1844, 2014
5X2L
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BU of 5x2l by Molmil
Crystal Structure of Human Serine Racemase
Descriptor: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Serine racemase
Authors:Obita, T, Matsumoto, K, Mori, H, Toyooka, N, Mizuguchi, M.
Deposit date:2017-02-01
Release date:2018-01-31
Last modified:2021-02-24
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.
Bioorg. Med. Chem. Lett., 2017
7WL6
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BU of 7wl6 by Molmil
Crystal structure of I73L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Nakagawa, M, Obita, T, Mizuguchi, M.
Deposit date:2022-01-12
Release date:2022-11-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.418007 Å)
Cite:The hydrophobic residue Leu73 is crucial for the high stability and low aggregation properties of murine transthyretin.
Biochem.J., 479, 2022
2RTV
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BU of 2rtv by Molmil
Tachyplesin I in water
Descriptor: Tachyplesin-1
Authors:Kushibiki, T, Kamiya, M, Aizawa, T, Kumaki, Y, Kikukawa, T, Mizuguchi, M, Demura, M, Kawabata, S.I, Kawano, K.
Deposit date:2013-09-19
Release date:2014-02-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.
Biochim.Biophys.Acta, 1844, 2014
5CG5
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BU of 5cg5 by Molmil
Neutron crystal structure of human farnesyl pyrophosphate synthase in complex with risedronate
Descriptor: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID, Farnesyl pyrophosphate synthase, MAGNESIUM ION
Authors:Yokoyama, T, Mizuguchi, M, Ostermann, A, Kusaka, K, Niimura, N, Schrader, T.E, Tanaka, I.
Deposit date:2015-07-09
Release date:2015-10-14
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.402 Å), X-RAY DIFFRACTION
Cite:Protonation State and Hydration of Bisphosphonate Bound to Farnesyl Pyrophosphate Synthase
J.Med.Chem., 58, 2015
5CG6
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BU of 5cg6 by Molmil
Neutron crystal structure of human farnesyl pyrophosphate synthase in complex with risedronate and isopentenyl pyrophosphate
Descriptor: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Farnesyl pyrophosphate synthase, ...
Authors:Yokoyama, T, Mizuguchi, M, Ostermann, A, Kusaka, K, Niimura, N, Schrader, T.E, Tanaka, I.
Deposit date:2015-07-09
Release date:2015-10-14
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.7 Å), X-RAY DIFFRACTION
Cite:Protonation State and Hydration of Bisphosphonate Bound to Farnesyl Pyrophosphate Synthase
J.Med.Chem., 58, 2015
6IN0
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BU of 6in0 by Molmil
Crystal structure of EphA3 in complex with 18-Crown-6
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, CHLORIDE ION, Ephrin type-A receptor 3
Authors:Yokoyama, T, Kosaka, Y, Matsumoto, K, Kitakami, R, Nabeshima, Y, Mizuguchi, M.
Deposit date:2018-10-24
Release date:2019-10-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Crown Ethers as Transthyretin Amyloidogenesis Inhibitor
To Be Published
6IMZ
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BU of 6imz by Molmil
Crystal structure of MTH1 in complex with 18-Crown-6
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine, 7,8-dihydro-8-oxoguanine triphosphatase, ...
Authors:Yokoyama, T, Kosaka, Y, Matsumoto, K, Kitakami, R, Nabeshima, Y, Mizuguchi, M.
Deposit date:2018-10-24
Release date:2019-10-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crown Ethers as Transthyretin Amyloidogenesis Inhibitor
To Be Published
6IMX
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BU of 6imx by Molmil
Crystal structure of V30M mutated transthyretin in complex with 18-Crown-6
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Transthyretin
Authors:Yokoyama, T, Kosaka, Y, Matsumoto, K, Kitakami, R, Nabeshima, Y, Mizuguchi, M.
Deposit date:2018-10-24
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Crown Ethers as Transthyretin Amyloidogenesis Inhibitors.
J. Med. Chem., 62, 2019
6IN4
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BU of 6in4 by Molmil
Crystal structure of apo DAPK1 in the presence of 18-crown-6
Descriptor: Death-associated protein kinase 1, SULFATE ION
Authors:Yokoyama, T, Kosaka, Y, Matsumoto, K, Kitakami, R, Nabeshima, Y, Mizuguchi, M.
Deposit date:2018-10-24
Release date:2019-10-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crown Ethers as Transthyretin Amyloidogenesis Inhibitor
To Be Published
6IN3
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BU of 6in3 by Molmil
Crystal structure of DOT1L in complex with 18-Crown-6
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Histone-lysine N-methyltransferase, H3 lysine-79 specific, ...
Authors:Yokoyama, T, Kosaka, Y, Matsumoto, K, Kitakami, R, Nabeshima, Y, Mizuguchi, M.
Deposit date:2018-10-24
Release date:2019-10-30
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crown Ethers as Transthyretin Amyloidogenesis Inhibitor
To Be Published

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PDB entries from 2024-09-18

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