2RTV
Tachyplesin I in water
Summary for 2RTV
| Entry DOI | 10.2210/pdb2rtv/pdb |
| Related | 2MDB |
| NMR Information | BMRB: 11539 |
| Descriptor | Tachyplesin-1 (1 entity in total) |
| Functional Keywords | antimicrobial protein |
| Biological source | Tachypleus tridentatus (Chinese horseshoe crab,Japanese horseshoe crab) |
| Cellular location | Secreted: P14213 |
| Total number of polymer chains | 1 |
| Total formula weight | 2272.81 |
| Authors | Kushibiki, T.,Kamiya, M.,Aizawa, T.,Kumaki, Y.,Kikukawa, T.,Mizuguchi, M.,Demura, M.,Kawabata, S.I.,Kawano, K. (deposition date: 2013-09-19, release date: 2014-02-19, Last modification date: 2024-10-16) |
| Primary citation | Kushibiki, T.,Kamiya, M.,Aizawa, T.,Kumaki, Y.,Kikukawa, T.,Mizuguchi, M.,Demura, M.,Kawabata, S.I.,Kawano, K. Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide. Biochim.Biophys.Acta, 1844:527-534, 2014 Cited by PubMed Abstract: Lipopolysaccharide (LPS) is a major constituent of the outer membrane of Gram-negative bacteria and is the very first site of interactions with antimicrobial peptides (AMPs). In order to gain better insight into the interaction between LPS and AMPs, we determined the structure of tachyplesin I (TP I), an antimicrobial peptide derived from horseshoe crab, in its bound state with LPS and proposed the complex structure of TP I and LPS using a docking program. CD and NMR measurements revealed that binding to LPS slightly extends the two β-strands of TP I and stabilizes the whole structure of TP I. The fluorescence wavelength of an intrinsic tryptophan of TP I and fluorescence quenching in the presence or absence of LPS indicated that a tryptophan residue is incorporated into the hydrophobic environment of LPS. Finally, we succeeded in proposing a structural model for the complex of TP I and LPS by using a docking program. The calculated model structure suggested that the cationic residues of TP I interact with phosphate groups and saccharides of LPS, whereas hydrophobic residues interact with the acyl chains of LPS. PubMed: 24389234DOI: 10.1016/j.bbapap.2013.12.017 PDB entries with the same primary citation |
| Experimental method | SOLUTION NMR |
Structure validation
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