Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1OYF
DownloadVisualize
BU of 1oyf by Molmil
Crystal Structure of Russelles viper (Daboia russellii pulchella) phospholipase A2 in a complex with venom 6-methyl heptanol
Descriptor: 6-METHYLHEPTAN-1-OL, ACETIC ACID, Phospholipase A2, ...
Authors:Singh, N, Jabeen, T, Sharma, S, Singh, T.P.
Deposit date:2003-04-04
Release date:2003-05-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal Structure of Russelles viper (Daboia russellii pulchella) phospholipase A2 in a complex with venom 6-methyl heptanol
To be Published
4U24
DownloadVisualize
BU of 4u24 by Molmil
Crystal structure of the E. coli ribosome bound to dalfopristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U85
DownloadVisualize
BU of 4u85 by Molmil
Human Pin1 with cysteine sulfinic acid 113
Descriptor: POLYETHYLENE GLYCOL (N=34), Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Authors:Li, W, Zhang, Y.
Deposit date:2014-08-01
Release date:2015-04-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Pin1 cysteine-113 oxidation inhibits its catalytic activity and cellular function in Alzheimer's disease.
Neurobiol.Dis., 76, 2015
2H9M
DownloadVisualize
BU of 2h9m by Molmil
WDR5 in complex with unmodified H3K4 peptide
Descriptor: H3 histone, WD-repeat protein 5
Authors:Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-06-10
Release date:2006-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
2H9N
DownloadVisualize
BU of 2h9n by Molmil
WDR5 in complex with monomethylated H3K4 peptide
Descriptor: H3 histone, WD-repeat protein 5
Authors:Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-06-10
Release date:2006-08-01
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
1P22
DownloadVisualize
BU of 1p22 by Molmil
Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity on the SCFbeta-TrCP1 ubiquitin ligase
Descriptor: Beta-catenin, F-box/WD-repeat protein 1A, Skp1
Authors:Wu, G, Xu, G, Schulman, B.A, Jeffrey, P.D, Harper, J.W, Pavletich, N.P.
Deposit date:2003-04-14
Release date:2003-07-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of a beta-TrCP1-Skp1-beta-Catenin complex: destruction motif binding and lysine specificity of the SCFbeta-TrCP1 ubiquitin ligase
Mol.Cell, 11, 2003
1TL7
DownloadVisualize
BU of 1tl7 by Molmil
Complex Of Gs- With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'(3')-O-(N-methylanthraniloyl)-guanosine 5'-triphosphate and Mn
Descriptor: 3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Adenylate cyclase, ...
Authors:Mou, T.C, Gille, A, Seifert, R.J, Sprang, S.R.
Deposit date:2004-06-09
Release date:2004-12-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for the inhibition of mammalian membrane adenylyl cyclase by 2 '(3')-O-(N-Methylanthraniloyl)-guanosine 5 '-triphosphate.
J.Biol.Chem., 280, 2005
1SVK
DownloadVisualize
BU of 1svk by Molmil
Structure of the K180P mutant of Gi alpha subunit bound to AlF4 and GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(i), alpha-1 subunit, ...
Authors:Thomas, C.J, Du, X, Li, P, Wang, Y, Ross, E.M, Sprang, S.R.
Deposit date:2004-03-29
Release date:2004-06-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Uncoupling conformational change from GTP hydrolysis in a heterotrimeric G protein {alpha}-subunit.
Proc.Natl.Acad.Sci.USA, 101, 2004
2H9P
DownloadVisualize
BU of 2h9p by Molmil
WDR5 in complex with trimethylated H3K4 peptide
Descriptor: H3 histone, WD-repeat protein 5
Authors:Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-06-10
Release date:2006-08-01
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
2HES
DownloadVisualize
BU of 2hes by Molmil
Cytosolic Iron-sulphur Assembly Protein- 1
Descriptor: CALCIUM ION, Ydr267cp
Authors:Srinivasan, V, Michel, H, Lill, R, Daili, J.A.N, Pierik, A.J.
Deposit date:2006-06-22
Release date:2007-07-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the Yeast WD40 Domain Protein Cia1, a Component Acting Late in Iron-Sulfur Protein Biogenesis.
Structure, 15, 2007
1PFO
DownloadVisualize
BU of 1pfo by Molmil
PERFRINGOLYSIN O
Descriptor: PERFRINGOLYSIN O
Authors:Rossjohn, J, Parker, M.W.
Deposit date:1997-07-31
Release date:1998-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a cholesterol-binding, thiol-activated cytolysin and a model of its membrane form.
Cell(Cambridge,Mass.), 89, 1997
1PB5
DownloadVisualize
BU of 1pb5 by Molmil
NMR Structure of a Prototype LNR Module from Human Notch1
Descriptor: CALCIUM ION, Neurogenic locus notch homolog protein 1
Authors:Vardar, D, North, C.L, Sanchez-Irizarry, C, Aster, J.C, Blacklow, S.C.
Deposit date:2003-05-14
Release date:2003-06-17
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of a Prototype Lin12-Notch Repeat Module from Human Notch1
Biochemistry, 42, 2003
1TBG
DownloadVisualize
BU of 1tbg by Molmil
BETA-GAMMA DIMER OF THE HETEROTRIMERIC G-PROTEIN TRANSDUCIN
Descriptor: TRANSDUCIN
Authors:Sondek, J.S, Bohm, A, Lambright, D.G, Hamm, H.E, Sigler, P.B.
Deposit date:1996-06-15
Release date:1997-04-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a G-protein beta gamma dimer at 2.1A resolution.
Nature, 379, 1996
1TQ0
DownloadVisualize
BU of 1tq0 by Molmil
Crystal structure of the potent anticoagulant thrombin mutant W215A/E217A in free form
Descriptor: Prothrombin
Authors:Pineda, A.O, Chen, Z.-W, Caccia, S, Savvides, S.N, Waksman, G, Mathews, F.S, Di Cera, E.
Deposit date:2004-06-16
Release date:2004-08-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The anticoagulant thrombin mutant W215A/E217A has a collapsed primary specificity pocket
J.Biol.Chem., 279, 2004
1TRS
DownloadVisualize
BU of 1trs by Molmil
THE HIGH-RESOLUTION THREE-DIMENSIONAL SOLUTION STRUCTURES OF THE OXIDIZED AND REDUCED STATES OF HUMAN THIOREDOXIN
Descriptor: THIOREDOXIN
Authors:Clore, G.M, Qin, J, Gronenborn, A.M.
Deposit date:1994-05-10
Release date:1994-09-30
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:The high-resolution three-dimensional solution structures of the oxidized and reduced states of human thioredoxin.
Structure, 2, 1994
1UB2
DownloadVisualize
BU of 1ub2 by Molmil
Crystal structure of catalase-peroxidase from Synechococcus PCC 7942
Descriptor: Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Wada, K, Tada, T.
Deposit date:2003-03-28
Release date:2004-03-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of catalase-peroxidase from Synechococcus PCC 7942
To be Published
1TQ7
DownloadVisualize
BU of 1tq7 by Molmil
Crystal structure of the anticoagulant thrombin mutant W215A/E217A bound to PPACK
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, Prothrombin, ...
Authors:Pineda, A.O, Chen, Z.-W, Caccia, S, Savvides, S.N, Waksman, G, Mathews, F.S, Di Cera, E.
Deposit date:2004-06-16
Release date:2004-08-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The anticoagulant thrombin mutant W215A/E217A has a collapsed primary specificity pocket
J.Biol.Chem., 279, 2004
1TRJ
DownloadVisualize
BU of 1trj by Molmil
Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Descriptor: Guanine nucleotide-binding protein beta subunit-like protein, Helix 39 of 18S rRNA, Helix 40 of 18S rRNA
Authors:Sengupta, J, Nilsson, J, Gursky, R, Spahn, C.M, Nissen, P, Frank, J.
Deposit date:2004-06-21
Release date:2004-09-28
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM
Nat.Struct.Mol.Biol., 11, 2004
2HL7
DownloadVisualize
BU of 2hl7 by Molmil
Crystal structure of the periplasmic domain of CcmH from Pseudomonas aeruginosa
Descriptor: Cytochrome C-type biogenesis protein CcmH, TETRAETHYLENE GLYCOL
Authors:Di Matteo, A, Travaglini-Allocatelli, C, Gianni, S, Brunori, M.
Deposit date:2006-07-06
Release date:2007-07-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A strategic protein in cytochrome c maturation: three-dimensional structure of CcmH and binding to apocytochrome c
J.Biol.Chem., 282, 2007
2I1X
DownloadVisualize
BU of 2i1x by Molmil
Bacteriorhodopsin/lipid complex, D96A mutant
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, 2,10,23-TRIMETHYL-TETRACOSANE, Bacteriorhodopsin, ...
Authors:Lanyi, J.K, Schobert, B.
Deposit date:2006-08-15
Release date:2006-10-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Propagating Structural Perturbation Inside Bacteriorhodopsin: Crystal Structures of the M State and the D96A and T46V Mutants.
Biochemistry, 45, 2006
2I94
DownloadVisualize
BU of 2i94 by Molmil
NMR Structure of recoverin bound to rhodopsin kinase
Descriptor: CALCIUM ION, Recoverin, Rhodopsin kinase
Authors:Ames, J.B.
Deposit date:2006-09-05
Release date:2006-10-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural Basis for Calcium-induced Inhibition of Rhodopsin Kinase by Recoverin.
J.Biol.Chem., 281, 2006
9BQJ
DownloadVisualize
BU of 9bqj by Molmil
RO76 bound muOR-Gi1-scFv16 complex structure
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Wang, H, Majumdar, S, Kobilka, B.K.
Deposit date:2024-05-10
Release date:2024-09-11
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Signaling Modulation Mediated by Ligand Water Interactions with the Sodium Site at mu OR.
Acs Cent.Sci., 10, 2024
3DF0
DownloadVisualize
BU of 3df0 by Molmil
Calcium-dependent complex between m-calpain and calpastatin
Descriptor: CALCIUM ION, Calpain small subunit 1, Calpain-2 catalytic subunit, ...
Authors:Moldoveanu, T, Gehring, K, Green, D.R.
Deposit date:2008-06-11
Release date:2008-11-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Concerted multi-pronged attack by calpastatin to occlude the catalytic cleft of heterodimeric calpains.
Nature, 456, 2008
3DAW
DownloadVisualize
BU of 3daw by Molmil
Structure of the actin-depolymerizing factor homology domain in complex with actin
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Paavilainen, V.O, Oksanen, E, Goldman, A, Lappalainen, P.
Deposit date:2008-05-30
Release date:2008-07-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of the actin-depolymerizing factor homology domain in complex with actin
J.Cell Biol., 182, 2008
6U4A
DownloadVisualize
BU of 6u4a by Molmil
BRD3-BD1 in complex with the cyclic peptide 3.1_3
Descriptor: Bromodomain-containing protein 3, GLYCEROL, SULFATE ION, ...
Authors:Patel, K, Walshe, J.L, Walport, L.J, Mackay, J.P.
Deposit date:2019-08-24
Release date:2020-08-19
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Cyclic peptides can engage a single binding pocket through highly divergent modes.
Proc.Natl.Acad.Sci.USA, 117, 2020

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon