PDB: 9786 resultsInfo pagesStatus searchChemie searchBIRD

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6VRP	Reverse Transcriptase Diabody with R83T Mutation Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Single-chain Fv Authors: Chesterman, C, Arnold, E. Deposit date: 2020-02-08 Release date: 2021-02-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure, 29, 2021
6VUG	Diabody bound to a Reverse Transcriptase Aptamer Complex Descriptor: DNA (38-MER), GLYCEROL, Heavy chain variable fragment, ... Authors: Chesterman, C, Arnold, E. Deposit date: 2020-02-15 Release date: 2021-02-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3 Å) Cite: Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure, 29, 2021
6WJI	2.05 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2 Descriptor: CHLORIDE ION, Nucleoprotein Authors: Minasov, G, Shuvalova, L, Wiersum, G, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2020-04-13 Release date: 2020-04-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.052 Å) Cite: Serodominant SARS-CoV-2 Nucleocapsid Peptides Map to Unstructured Protein Regions. Microbiol Spectr, 2023
8GS6	Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Anraku, Y, Tabata-Sasaki, K, Kita, S, Fukuhara, H, Maenaka, K, Hashiguchi, T. Deposit date: 2022-09-05 Release date: 2022-10-26 Last modified: 2023-03-29 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Virological characteristics of the SARS-CoV-2 Omicron BA.2.75 variant. Cell Host Microbe, 30, 2022
8GZ6	Crystal structure of neutralizing VHH P17 in complex with SARS-CoV-2 Alpha variant spike receptor-binding domain Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Nanobody P17 Authors: Yamaguchi, K, Anzai, I, Maeda, R, Moriguchi, M, Watanabe, T, Imura, A, Takaori-Kondo, A, Inoue, T. Deposit date: 2022-09-25 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant. J.Biochem., 173, 2023
8GZ5	Crystal structure of neutralizing VHH P17 in complex with SARS-CoV-2 Alpha variant spike receptor-binding domain Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody P17, ... Authors: Yamaguchi, K, Anzai, I, Maeda, R, Moriguchi, M, Watanabe, T, Imura, A, Takaori-Kondo, A, Inoue, T. Deposit date: 2022-09-25 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant. J.Biochem., 173, 2023
6RQM	A blocking anti-CTLA-4 Nanobody (KN044) complexed with CTLA-4 Descriptor: A blocking anti-CTLA-4 nanobody (KN044), Cytotoxic T-lymphocyte protein 4 Authors: Zhang, F, Zhou, A, Gao, H. Deposit date: 2019-05-16 Release date: 2020-07-08 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3 Å) Cite: A blocking anti-CTLA-4 Nanobody (KN044) complexed with CTLA-4 To Be Published
6TCH	Binary complex of 14-3-3 sigma and a high-affinity non-canonical 9-mer peptide binder Descriptor: 14-3-3 protein sigma, CHLORIDE ION, DLY-NVA-PPN-KCJ-SEP-PPN-B3S-BAL-PPN-LYS, ... Authors: Somsen, B.A, Ottmann, C. Deposit date: 2019-11-06 Release date: 2020-07-01 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.801 Å) Cite: Ultra-large chemical libraries for the discovery of high-affinity peptide binders. Nat Commun, 11, 2020
6RR7	Influenza A virus (A/NT/60/1968) polymerase Heterotrimer bound to 3'5' vRNA promoter and capped RNA primer Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-D(*(M7G))-R(P*AP*AP*UP*CP*U)-3'), ... Authors: Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M. Deposit date: 2019-05-17 Release date: 2019-09-04 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Structures of influenza A virus RNA polymerase offer insight into viral genome replication. Nature, 573, 2019
5KU2	expanded poliovirus in complex with VHH 7A Descriptor: VHH 7A, VP1, VP2, ... Authors: Strauss, M, Schotte, L, Filman, D.J, Hogle, J.M. Deposit date: 2016-07-12 Release date: 2016-11-02 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Cryo-electron Microscopy Structures of Expanded Poliovirus with VHHs Sample the Conformational Repertoire of the Expanded State. J. Virol., 91, 2017
5KUX	Designed influenza hemagglutinin binding protein HSB.2 Descriptor: Designed influenza inhibitor protein HSB.2 Authors: Lee, P.S, Bernard, S.M, Wilson, I.A. Deposit date: 2016-07-13 Release date: 2017-06-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site. Nat. Biotechnol., 35, 2017
7A6O	Crystal Structure of the Complex of the Recombinant Von Willebrand Factor AIM-A1 domain and VHH81 at 2.1 Angstrom resolution Descriptor: SULFATE ION, VHH81 Nanobody fragment, von Willebrand factor Authors: Brown, A.K, Emsley, J. Deposit date: 2020-08-25 Release date: 2021-03-03 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.117 Å) Cite: Activation of von Willebrand factor via mechanical unfolding of its discontinuous autoinhibitory module. Nat Commun, 12, 2021
6ZPL	Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor, sybody Sb_GlyT1#7 and bound Na and Cl ions. Descriptor: CHLORIDE ION, Endoglucanase H, SODIUM ION, ... Authors: Shahsavar, A, Stohler, P, Bourenkov, G, Zimmermann, I, Siegrist, M, Guba, W, Pinard, E, Sinning, S, Seeger, M.A, Schneider, T.R, Dawson, R.J.P, Nissen, P. Deposit date: 2020-07-08 Release date: 2021-03-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.945 Å) Cite: Structural insights into the inhibition of glycine reuptake. Nature, 591, 2021
6ZTD	Crystal structure of the BCR Fab fragment from subset #169 case P6540 Descriptor: Heavy chain of the Fab fragment from BCR derived from the P6540 CLL clone, Light chain of the Fab fragment from BCR derived from the P6540 CLL clone Authors: Carriles, A.A, Minici, C, Degano, M. Deposit date: 2020-07-18 Release date: 2021-05-26 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.43 Å) Cite: Higher-order immunoglobulin repertoire restrictions in CLL: the illustrative case of stereotyped subsets 2 and 169. Blood, 137, 2021
5KUY	Influenza hemagglutinin H3 A/Hong Kong/1/1968 in complex with designed inhibitor protein HSB.2A Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Designed influenza inhibitor HSB.2A, ... Authors: Bernard, S.M, Wilson, I.A. Deposit date: 2016-07-13 Release date: 2017-06-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.598 Å) Cite: Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site. Nat. Biotechnol., 35, 2017
5KWL	expanded poliovirus in complex with VHH 10E Descriptor: VHH 10E, VP1, VP2, ... Authors: Strauss, M, Schotte, L, Filman, D.J, Hogle, J.M. Deposit date: 2016-07-18 Release date: 2016-11-02 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Cryo-electron Microscopy Structures of Expanded Poliovirus with VHHs Sample the Conformational Repertoire of the Expanded State. J. Virol., 91, 2017
7P56	Variant Surface Glycoprotein 2 (VSG2, MiTat1.2, VSG221) Bound to Calcium Descriptor: CALCIUM ION, Variant surface glycoprotein MITAT 1.2, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.735 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7P5D	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 317 and 319 to alanine) Descriptor: Variant surface glycoprotein, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.42 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7P57	VSG2 mutant structure lacking the calcium binding pocket Descriptor: Variant surface glycoprotein MITAT 1.2, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.961 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7P59	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) with two O-linked post-translational modifications Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Arest-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.27 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7P5B	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 319 to alanine), single O-linked glycosylated at Ser317 Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.13 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7P5A	Variant Surface Glycoprotein 3 (VSG3, MiTat1.3, VSG224) mutant (serine 317 to alanine), single O-linked glycosylated at Ser319 Descriptor: Variant surface glycoprotein, alpha-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Gkeka, A, Aresta-Branco, F, Stebbins, C.E, Papavasiliou, F.N. Deposit date: 2021-07-14 Release date: 2022-07-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Immunodominant surface epitopes power immune evasion in the African trypanosome. Cell Rep, 42, 2023
7A56	Schmallenberg Virus Envelope Glycoprotein Gc Fusion Domains in Postfusion Conformation Descriptor: CHLORIDE ION, Envelopment polyprotein, PHOSPHATE ION, ... Authors: Hellert, J, Guardado-Calvo, P, Rey, F.A. Deposit date: 2020-08-20 Release date: 2021-09-01 Last modified: 2023-03-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure, function, and evolution of the Orthobunyavirus membrane fusion glycoprotein. Cell Rep, 42, 2023
7A57	La Crosse Virus Envelope Glycoprotein Gc W1066H Mutant Fusion Domains in Postfusion Conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein Authors: Hellert, J, Guardado-Calvo, P, Rey, F.A. Deposit date: 2020-08-20 Release date: 2021-09-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.155 Å) Cite: Structure, function, and evolution of the Orthobunyavirus membrane fusion glycoprotein. Cell Rep, 42, 2023
2QTJ	Solution structure of human dimeric immunoglobulin A Descriptor: Ig alpha-1 chain C region, Kappa light chain IgA1 Authors: Bonner, A, Furtado, P.B, Almogren, A, Kerr, M.A, Perkins, S.J. Deposit date: 2007-08-02 Release date: 2008-01-22 Last modified: 2024-02-21 Method: SOLUTION SCATTERING Cite: Implications of the near-planar solution structure of human myeloma dimeric IgA1 for mucosal immunity and IgA nephropathy J.Immunol., 180, 2008

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