PDB: 1507 件ウェブページステータス検索Chemie searchBIRD

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4PYU	The conserved ubiquitin-like protein hub1 plays a critical role in splicing in human cells 分子名称: U4/U6.U5 tri-snRNP-associated protein 1, Ubiquitin-like protein 5 著者 Ammon, T, Mishra, S.K, Kowalska, K, Popowicz, G.M, Holak, T.A, Jentsch, S. 登録日 2014-03-28 公開日 2014-07-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The conserved ubiquitin-like protein Hub1 plays a critical role in splicing in human cells. J Mol Cell Biol, 6, 2014
4P5O	Structure of an RBX1-UBC12~NEDD8-CUL1-DCN1 complex: a RING-E3-E2~ubiquitin-like protein-substrate intermediate trapped in action 分子名称: Cullin-1, DCN1-like protein 1, E3 ubiquitin-protein ligase RBX1, ... 著者 Scott, D.C, Schulman, B.A. 登録日 2014-03-18 公開日 2014-07-02 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.1071 Å) 主引用文献 Structure of a RING E3 Trapped in Action Reveals Ligation Mechanism for the Ubiquitin-like Protein NEDD8. Cell, 157, 2014
4P4H	Caught-in-action signaling complex of RIG-I 2CARD domain and MAVS CARD domain 分子名称: Mitochondrial antiviral-signaling protein, Probable ATP-dependent RNA helicase DDX58, Ubiquitin-60S ribosomal protein L40 著者 Wu, B, Hur, S. 登録日 2014-03-12 公開日 2014-07-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I. Mol.Cell, 55, 2014
2MJB	Solution nmr structure of ubiquitin refined against dipolar couplings in 4 media 分子名称: Ubiquitin-60S ribosomal protein L40 著者 Maltsev, A, Grishaev, A, Roche, J, Zasloff, M, Bax, A. 登録日 2014-01-02 公開日 2014-03-26 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Improved cross validation of a static ubiquitin structure derived from high precision residual dipolar couplings measured in a drug-based liquid crystalline phase. J.Am.Chem.Soc., 136, 2014
2MJ5	Structure of the UBA Domain of Human NBR1 in Complex with Ubiquitin 分子名称: Next to BRCA1 gene 1 protein, Polyubiquitin-C 著者 Walinda, E, Morimoto, D, Sugase, K, Komatsu, M, Tochio, H, Shirakawa, M. 登録日 2013-12-25 公開日 2014-04-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin. J.Biol.Chem., 289, 2014
2MI8	Solution structure of lysine-free (K0) ubiquitin 分子名称: Ubiquitin 著者 Huang, T, Li, J.R, Byrd, A.R. 登録日 2013-12-09 公開日 2014-04-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of lysine-free (K0) ubiquitin. Protein Sci., 23, 2014
2RU6	The pure alternative state of ubiquitin 分子名称: Ubiquitin 著者 Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R. 登録日 2013-12-04 公開日 2014-02-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme Biochemistry, 53, 2014
4NQL	The crystal structure of the DUB domain of AMSH orthologue, Sst2 from S. pombe, in complex with lysine 63-linked diubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, Ubiquitin, ... 著者 Ronau, J.A, Shrestha, R.K, Das, C. 登録日 2013-11-25 公開日 2014-10-08 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Insights into the mechanism of deubiquitination by JAMM deubiquitinases from cocrystal structures of the enzyme with the substrate and product. Biochemistry, 53, 2014
4NQK	Structure of an Ubiquitin complex 分子名称: Probable ATP-dependent RNA helicase DDX58, Ubiquitin 著者 Peisley, A, Wu, B, Hur, S. 登録日 2013-11-25 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Structural basis for ubiquitin-mediated antiviral signal activation by RIG-I. Nature, 509, 2014
4NNJ	Crystal structure of Uba1 in complex with ubiquitin-AMP and thioesterified ubiquitin 分子名称: ADENOSINE MONOPHOSPHATE, GLYCEROL, SULFATE ION, ... 著者 Schaefer, A, Schindelin, H. 登録日 2013-11-18 公開日 2014-05-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the ubiquitin-activating enzyme loaded with two ubiquitin molecules. Acta Crystallogr.,Sect.D, 70, 2014
4N9F	Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex 分子名称: Core-binding factor subunit beta, Cullin-5, Transcription elongation factor B polypeptide 1, ... 著者 Guo, Y.Y, Dong, L.Y, Huang, Z.W. 登録日 2013-10-21 公開日 2014-01-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis for hijacking CBF-b and CUL5 E3 ligase complex by HIV-1 Vif Nature, 505, 2014
4MSM	Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 E286A mutant bound to ubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, PHOSPHATE ION, ... 著者 Shrestha, R.K, Ronau, J.A, Das, C. 登録日 2013-09-18 公開日 2014-06-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4MSQ	Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 catalytic domain bound to ubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, PHOSPHATE ION, ... 著者 Shrestha, R.K, Ronau, J.A, Das, C. 登録日 2013-09-18 公開日 2014-06-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.952 Å) 主引用文献 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4MM3	Crystal structure of SARS-CoV papain-like protease PLpro in complex with ubiquitin aldehyde 分子名称: Papain-like proteinase, Ubiquitin, ZINC ION 著者 Mesecar, A.D, Ratia, K. 登録日 2013-09-08 公開日 2014-07-02 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (2.752 Å) 主引用文献 Structural Basis for the Ubiquitin-Linkage Specificity and deISGylating activity of SARS-CoV papain-like protease. Plos Pathog., 10, 2014
2MCN	Distinct ubiquitin binding modes exhibited by SH3 domains: molecular determinants and functional implications 分子名称: CD2-associated protein, Ubiquitin 著者 Ortega-Roldan, J, Salmon, L, Azuaga, A, Blackledge, M, Van Nuland, N. 登録日 2013-08-22 公開日 2014-02-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Distinct ubiquitin binding modes exhibited by SH3 domains: molecular determinants and functional implications. Plos One, 8, 2013
4MDK	Cdc34-ubiquitin-CC0651 complex 分子名称: 4,5-dideoxy-5-(3',5'-dichlorobiphenyl-4-yl)-4-[(methoxyacetyl)amino]-L-arabinonic acid, Ubiquitin, Ubiquitin-conjugating enzyme E2 R1 著者 Ceccarelli, D.F, Orlicky, S, Tyers, M, Sicheri, F. 登録日 2013-08-22 公開日 2013-12-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6095 Å) 主引用文献 E2 enzyme inhibition by stabilization of a low-affinity interface with ubiquitin. Nat.Chem.Biol., 10, 2014
2MBQ	K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl 分子名称: Ubiquitin 著者 Castaneda, C.A, Fushman, D. 登録日 2013-08-03 公開日 2013-09-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure, 21, 2013
4M0W	Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin 分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Replicase polyprotein 1a, ... 著者 Chou, C.-Y, Chen, H.-Y, Lai, H.-Y, Cheng, S.-C, Chou, Y.-W. 登録日 2013-08-02 公開日 2014-02-12 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural basis for catalysis and ubiquitin recognition by the severe acute respiratory syndrome coronavirus papain-like protease Acta Crystallogr.,Sect.D, 70, 2014
2MBO	K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl 分子名称: Ubiquitin 著者 Castaneda, C.A, Fushman, D. 登録日 2013-08-02 公開日 2013-09-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure, 21, 2013
2MBH	NMR structure of EKLF(22-40)/Ubiquitin Complex 分子名称: Krueppel-like factor 1, Ubiquitin 著者 Raiola, L, Omichinski, J.G. 登録日 2013-07-31 公開日 2013-10-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Characterization of a Noncovalent Complex between Ubiquitin and the Transactivation Domain of the Erythroid-Specific Factor EKLF. Structure, 21, 2013
2MBE	Backbone 1H and 15N Chemical Shift Assignments for the first domain of FAT10 分子名称: Ubiquitin D 著者 Wang, W, Lim, L, Qin, H. 登録日 2013-07-30 公開日 2014-08-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Disruption of FAT10-MAD2 binding inhibits tumor progression. Proc.Natl.Acad.Sci.USA, 111, 2014
2MBB	Solution Structure of the human Polymerase iota UBM1-Ubiquitin Complex 分子名称: Immunoglobulin G-binding protein G/DNA polymerase iota fusion protein, Polyubiquitin-B 著者 Wang, S, Zhou, P. 登録日 2013-07-29 公開日 2014-06-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Sparsely-sampled, high-resolution 4-D omit spectra for detection and assignment of intermolecular NOEs of protein complexes. J.Biomol.Nmr, 59, 2014
4V8Y	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex 分子名称: 18S RIBOSOMAL RNA, 25S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN S0-A, ... 著者 Fernandez, I.S, Bai, X.C, Hussain, T, Kelley, A.C, Lorsch, J.R, Ramakrishnan, V, Scheres, S.H.W. 登録日 2013-07-20 公開日 2014-07-09 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 2013
4V8Z	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex 分子名称: 18S RIBOSOMAL RNA, 25S RIBOSOMAL RNA, 40S RIBOSOMAL PROTEIN S0-A, ... 著者 Fernandez, I.S, Bai, X.C, Hussain, T, Kelley, A.C, Lorsch, J.R, Ramakrishnan, V, Scheres, S.H.W. 登録日 2013-07-20 公開日 2014-07-09 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 2013
4LJO	Structure of an active ligase (HOIP)/ubiquitin transfer complex 分子名称: E3 ubiquitin-protein ligase RNF31, IMIDAZOLE, Polyubiquitin-C, ... 著者 Rana, R.R, Stieglitz, B, Koliopoulos, M.G, Morris-Davies, A.C, Christodoulou, E, Howell, S, Brown, N.R, Rittinger, K. 登録日 2013-07-05 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.564 Å) 主引用文献 Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature, 503, 2013

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