Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12929 results

3ZW0
DownloadVisualize
BU of 3zw0 by Molmil
Structure of BambL lectin from Burkholderia ambifaria
Descriptor: BAMBL LECTIN, alpha-L-fucopyranose
Authors:Audfray, A, Claudinon, J, Abounit, S, Ruvoen-Clouet, N, Larson, G, Wimmerova, M, LePendu, J, Romer, W, Varrot, A, Imberty, A.
Deposit date:2011-07-28
Release date:2011-12-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Fucose-Binding Lectin from Opportunistic Pathogen Burkholderia Ambifaria Binds to Both Plant and Human Oligosaccharidic Epitopes.
J.Biol.Chem., 287, 2012
3ZS3
DownloadVisualize
BU of 3zs3 by Molmil
High resolution structure of Mal d 2, the thaumatin like food allergen from apple
Descriptor: ACETATE ION, ACETIC ACID, FORMIC ACID, ...
Authors:Kopec, J, Smole, U, Pavkov, T, Breiteneder, H, Keller, W.
Deposit date:2011-06-22
Release date:2012-07-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High Resolution Structure of Mal D 2, the Thaumatin Like Food Allergen from Apple
To be Published
1ONP
DownloadVisualize
BU of 1onp by Molmil
IspC complex with Mn2+ and fosmidomycin
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, MANGANESE (II) ION
Authors:Steinbacher, S, Kaiser, J, Eisenreich, W, Huber, R, Bacher, A, Rohdich, F.
Deposit date:2003-02-28
Release date:2003-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of fosmidomycin action revealed by the complex with 2-C-methyl-D-erythritol 4-phosphate synthase (IspC). Implications for the catalytic mechanism and anti-malaria drug development.
J.BIOL.CHEM., 278, 2003
5W8W
DownloadVisualize
BU of 5w8w by Molmil
Bacillus cereus Zn-dependent metallo-beta-lactamase at pH 7 - new refinement
Descriptor: Metallo-beta-lactamase type 2, SULFATE ION, UNKNOWN ATOM OR ION, ...
Authors:Gonzalez, J.M, Shabalin, I.G, Raczynska, J.E, Jaskolski, M, Minor, W, Wlodawer, A, Gonzalez, M.M, Vila, A.J.
Deposit date:2017-06-22
Release date:2017-07-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A close look onto structural models and primary ligands of metallo-beta-lactamases.
Drug Resist. Updat., 40, 2018
3REE
DownloadVisualize
BU of 3ree by Molmil
Crystal structure of mitoNEET
Descriptor: CDGSH iron-sulfur domain-containing protein 1, FE2/S2 (INORGANIC) CLUSTER
Authors:Funk, M.O, Arif, W, Xu, S, Mueser, T.C.
Deposit date:2011-04-04
Release date:2011-04-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Complexes of the Outer Mitochondrial Membrane Protein MitoNEET with Resveratrol-3-Sulfate.
Biochemistry, 50, 2011
3ZVH
DownloadVisualize
BU of 3zvh by Molmil
Methylaspartate ammonia lyase from Clostridium tetanomorphum mutant Q73A
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Raj, H, Szymanski, W, de Villiers, J, Rozeboom, H.J, Veetil, V.P, Reis, C.R, de Villiers, M, de Wildeman, S, Dekker, F.J, Quax, W.J, Thunnissen, A.M.W.H, Feringa, B.L, Janssen, D.B, Poelarends, G.J.
Deposit date:2011-07-25
Release date:2012-05-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Engineering Methylaspartate Ammonia Lyase for the Asymmetric Synthesis of Unnatural Amino Acids.
Nat.Chem., 4, 2012
5WDA
DownloadVisualize
BU of 5wda by Molmil
Structure of the PulG pseudopilus
Descriptor: CALCIUM ION, General secretion pathway protein G
Authors:Lopez-Castilla, A, Thomassin, J.L, Bardiaux, B, Zheng, W, Nivaskumar, M, Yu, X, Nilges, M, Egelman, E.H, Izadi-Pruneyre, N, Francetic, O.
Deposit date:2017-07-04
Release date:2017-10-25
Last modified:2020-01-01
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Structure of the calcium-dependent type 2 secretion pseudopilus.
Nat Microbiol, 2, 2017
5YYC
DownloadVisualize
BU of 5yyc by Molmil
Crystal structure of alanine racemase from Bacillus pseudofirmus (OF4)
Descriptor: Alanine racemase, PYRIDOXAL-5'-PHOSPHATE
Authors:Dong, H, Hu, T.T, He, G.Z, Lu, D.R, Qi, J.X, Dou, Y.S, Long, W, He, X, Su, D, Ju, J.S.
Deposit date:2017-12-08
Release date:2019-01-02
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Structural features and kinetic characterization of alanine racemase from Bacillus pseudofirmus OF4.
Biochem. Biophys. Res. Commun., 497, 2018
4MTL
DownloadVisualize
BU of 4mtl by Molmil
Human Methyltransferase-Like Protein 21C
Descriptor: Protein-lysine methyltransferase METTL21C, S-ADENOSYL-L-HOMOCYSTEINE, UNKNOWN ATOM OR ION
Authors:Hong, B.S, Tempel, W, Dong, A, Li, Y, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2013-09-19
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Human Methyltransferase-Like Protein 21C
To be Published
4N7D
DownloadVisualize
BU of 4n7d by Molmil
Selenomethionine incorporated Bla g 4
Descriptor: Bla g 4 allergen variant 1, CITRIC ACID, GLYCEROL
Authors:Offermann, L.R, Chan, S.L, Osinski, T, Tan, Y.W, Chew, F.T, Sivaraman, J, Mok, Y.K, Minor, W, Chruszcz, M.
Deposit date:2013-10-15
Release date:2014-05-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The major cockroach allergen Bla g 4 binds tyramine and octopamine.
Mol.Immunol., 60, 2014
4N7V
DownloadVisualize
BU of 4n7v by Molmil
Crystal structure of human Plk4 cryptic polo box (CPB) in complex with a Cep152 N-terminal fragment
Descriptor: Centrosomal protein of 152 kDa, Serine/threonine-protein kinase PLK4
Authors:Park, S.-Y, Park, J.-E, Tian, L, Kim, T.-S, Yang, W, Lee, K.S.
Deposit date:2013-10-16
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.758 Å)
Cite:Molecular basis for unidirectional scaffold switching of human Plk4 in centriole biogenesis.
Nat.Struct.Mol.Biol., 21, 2014
5WSC
DownloadVisualize
BU of 5wsc by Molmil
Crystal of pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate, soaked with allosteric activators AMP and Glucose 6-Phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Zhong, W, Cai, Q, El Sahili, A, Lescar, J, Dedon, P.C.
Deposit date:2016-12-06
Release date:2017-11-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Allosteric pyruvate kinase-based "logic gate" synergistically senses energy and sugar levels in Mycobacterium tuberculosis.
Nat Commun, 8, 2017
4N9D
DownloadVisualize
BU of 4n9d by Molmil
Fragment-based Design of 3-Aminopyridine-derived Amides as Potent Inhibitors of Human Nicotinamide Phosphoribosyltransferase (NAMPT)
Descriptor: 1,2-ETHANEDIOL, 4-({[(4-tert-butylphenyl)sulfonyl]amino}methyl)-N-(pyridin-3-yl)benzamide, Nicotinamide phosphoribosyltransferase, ...
Authors:Dragovich, P.S, Zhao, G, Baumeister, T, Bravo, B, Giannetti, A.M, Ho, Y, Hua, R, Li, G, Liang, X, O'Brien, T, Skelton, N.J, Wang, C, Zhao, Q, Oh, A, Wang, W, Wang, Y, Xiao, Y, Yuen, P, Zak, M, Zheng, X.
Deposit date:2013-10-20
Release date:2014-02-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Fragment-based design of 3-aminopyridine-derived amides as potent inhibitors of human nicotinamide phosphoribosyltransferase (NAMPT).
Bioorg.Med.Chem.Lett., 24, 2014
3RPX
DownloadVisualize
BU of 3rpx by Molmil
Crystal structure of complement component 1, q subcomponent binding protein, C1QBP
Descriptor: Complement component 1 Q subcomponent-binding protein, UNKNOWN ATOM OR ION
Authors:Tempel, W, Tong, Y, Crombet, L, Shen, Y, Guan, X, Nedyalkova, L, Walker, J.R, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2011-04-27
Release date:2011-05-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structure of complement component 1, q subcomponent binding protein, C1QBP
to be published
4NA5
DownloadVisualize
BU of 4na5 by Molmil
Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E748N
Descriptor: Poly(ADP-ribose) glycohydrolase, SULFATE ION
Authors:Wang, Z, Cheng, Z, Xu, W.
Deposit date:2013-10-21
Release date:2014-01-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase.
Plos One, 9, 2014
1OLO
DownloadVisualize
BU of 1olo by Molmil
Hexameric Replicative DNA Helicase RepA from Plasmid RSF1010 - Cubic Crystal Structure
Descriptor: REGULATORY PROTEIN REPA, SULFATE ION
Authors:Niedenzu, T, Saenger, W.
Deposit date:2003-08-08
Release date:2003-09-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Hexameric Rsf1010 Helicase Repa: The Structural and Functional Importance of Single Amino Acid Residues
Nucleic Acids Res., 31, 2003
5ZOD
DownloadVisualize
BU of 5zod by Molmil
Crystal Structure of hFen1 in apo form
Descriptor: Flap endonuclease 1, MAGNESIUM ION, POTASSIUM ION
Authors:Han, W, Hua, Y, Zhao, Y.
Deposit date:2018-04-13
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of 5' flap recognition and protein-protein interactions of human flap endonuclease 1.
Nucleic Acids Res., 46, 2018
3R77
DownloadVisualize
BU of 3r77 by Molmil
Crystal structure of the D38A mutant of isochorismatase PhzD from Pseudomonas fluorescens 2-79 in complex with 2-amino-2-desoxyisochorismate ADIC
Descriptor: (5S,6S)-6-amino-5-[(1-carboxyethenyl)oxy]cyclohexa-1,3-diene-1-carboxylic acid, CHLORIDE ION, Probable isochorismatase
Authors:Li, Q.A, Mavrodi, D.V, Thomashow, L.S, Roessle, M, Blankenfeldt, W.
Deposit date:2011-03-22
Release date:2011-03-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand Binding Induces an Ammonia Channel in 2-Amino-2-desoxyisochorismate (ADIC) Synthase PhzE.
J.Biol.Chem., 286, 2011
4MYU
DownloadVisualize
BU of 4myu by Molmil
Crystal structure of elongation factor G mutant(EFG)
Descriptor: Elongation factor G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Liu, G, Dong, J, Gong, W, Qin, Y.
Deposit date:2013-09-28
Release date:2014-08-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Crystal structure of elongation factor G mutant(EFG)
To be published
4MRX
DownloadVisualize
BU of 4mrx by Molmil
Crystal Structure of Y138F obelin mutant from Obelia longissima at 1.72 Angstrom resolution
Descriptor: C2-HYDROPEROXY-COELENTERAZINE, Obelin
Authors:Natashin, P.V, Ding, W, Eremeeva, E.V, Markova, S.V, Lee, J, Vysotski, E.S, Liu, Z.J.
Deposit date:2013-09-17
Release date:2014-03-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.718 Å)
Cite:Structures of the Ca2+-regulated photoprotein obelin Y138F mutant before and after bioluminescence support the catalytic function of a water molecule in the reaction.
Acta Crystallogr.,Sect.D, 70, 2014
5V56
DownloadVisualize
BU of 5v56 by Molmil
2.9A XFEL structure of the multi-domain human smoothened receptor (with E194M mutation) in complex with TC114
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN MONONUCLEOTIDE, N-methyl-N-[1-[4-(2-methylpyrazol-3-yl)phthalazin-1-yl]piperidin-4-yl]-4-nitro-2-(trifluoromethyl)benzamide, ...
Authors:Zhang, X, Zhao, F, Wu, Y, Yang, J, Han, G.W, Zhao, S, Ishchenko, A, Ye, L, Lin, X, Ding, K, Dharmarajan, V, Griffin, P.R, Gati, C, Nelson, G, Hunter, M.S, Hanson, M.A, Cherezov, V, Stevens, R.C, Tan, W, Tao, H, Xu, F.
Deposit date:2017-03-13
Release date:2017-05-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand.
Nat Commun, 8, 2017
3R1D
DownloadVisualize
BU of 3r1d by Molmil
Crystal structure of GC(8BrG)GCGGCGGC duplex
Descriptor: BROMIDE ION, RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3'), SULFATE ION
Authors:Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W.
Deposit date:2011-03-10
Release date:2011-06-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome.
Nucleic Acids Res., 39, 2011
1ONR
DownloadVisualize
BU of 1onr by Molmil
STRUCTURE OF TRANSALDOLASE B
Descriptor: TRANSALDOLASE B
Authors:Jia, J, Huang, W, Lindqvist, Y, Schneider, G.
Deposit date:1996-08-13
Release date:1997-03-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of transaldolase B from Escherichia coli suggests a circular permutation of the alpha/beta barrel within the class I aldolase family.
Structure, 4, 1996
4D0Q
DownloadVisualize
BU of 4d0q by Molmil
Hyaluronan Binding Module of the Streptococcal Pneumoniae Hyaluronate Lyase
Descriptor: 1,2-ETHANEDIOL, HYALURONATE LYASE
Authors:Suits, M.D.L, Pluvinage, B, Law, A, Liu, Y, Palma, A.S, Chai, W, Feizi, T, Boraston, A.B.
Deposit date:2014-04-29
Release date:2014-08-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Conformational Analysis of the Streptococcus Pneumoniae Hyaluronate Lyase and Characterization of its Hyaluronan-Specific Carbohydrate-Binding Module.
J.Biol.Chem., 289, 2014
5ZW5
DownloadVisualize
BU of 5zw5 by Molmil
Structure of SeMet-spAimR
Descriptor: AimR transcriptional regulator
Authors:Cheng, W, Dou, C.
Deposit date:2018-05-14
Release date:2018-08-29
Last modified:2019-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and functional insights into the regulation of the lysis-lysogeny decision in viral communities.
Nat Microbiol, 3, 2018

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon