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PDB: 51964 results

6I8H
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BU of 6i8h by Molmil
Structure of the plant immune signaling node EDS1 (enhanced disease susceptibility 1) in complex with nanobody ENB15
Descriptor: EDS1-specific nanobody, Protein EDS1L
Authors:Niefind, K, Voss, M, Toelzer, C.
Deposit date:2018-11-20
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.682 Å)
Cite:Arabidopsis immunity regulator EDS1 in a PAD4/SAG101-unbound form is a monomer with an inherently inactive conformation.
J.Struct.Biol., 208, 2019
4HZ2
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BU of 4hz2 by Molmil
Crystal structure of glutathione s-transferase xaut_3756 (target efi-507152) from xanthobacter autotrophicus py2
Descriptor: BENZOIC ACID, GLUTATHIONE, Glutathione S-transferase domain, ...
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Al Obaidi, N.F, Stead, M, Love, J, Gerlt, J.A, Armstrong, R.N, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-11-14
Release date:2012-11-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of glutathione s-transferase xaut_3756 from xanthobacter autotrophicus py2
To be Published
3EH7
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BU of 3eh7 by Molmil
The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
Descriptor: 4-hydroxybutyrate CoA-transferase, CHLORIDE ION
Authors:Cuff, M.E, Duggan, E, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-09-11
Release date:2008-12-09
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
TO BE PUBLISHED
1ICA
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BU of 1ica by Molmil
REFINED THREE-DIMENSIONAL STRUCTURE OF INSECT DEFENSIN A
Descriptor: INSECT DEFENSIN A
Authors:Cornet, B, Bonmatin, J.M, Ptak, M, Vovelle, F.
Deposit date:1994-12-16
Release date:1995-07-10
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Refined three-dimensional solution structure of insect defensin A.
Structure, 3, 1995
6IJB
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BU of 6ijb by Molmil
Structure of 3-methylmercaptopropionate CoA ligase mutant K523A in complex with AMP and MMPA
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-(methylsulfanyl)propanoic acid, ADENOSINE MONOPHOSPHATE, ...
Authors:Shao, X, Cao, H.Y, Wang, P, Li, C.Y, Zhao, F, Peng, M, Chen, X.L, Zhang, Y.Z.
Deposit date:2018-10-09
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.111 Å)
Cite:Mechanistic insight into 3-methylmercaptopropionate metabolism and kinetical regulation of demethylation pathway in marine dimethylsulfoniopropionate-catabolizing bacteria.
Mol.Microbiol., 111, 2019
3OVJ
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BU of 3ovj by Molmil
Structure of an amyloid forming peptide KLVFFA from amyloid beta in complex with orange G
Descriptor: 7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid, KLVFFA hexapeptide segment from Amyloid beta
Authors:Landau, M, Eisenberg, D.
Deposit date:2010-09-16
Release date:2011-07-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Towards a pharmacophore for amyloid.
Plos Biol., 9, 2011
3OVM
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BU of 3ovm by Molmil
X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ZINC ION, ...
Authors:Pegan, S.D, Sturdy, M, Ferry, G, Delagrange, P, Boutin, J.A.
Deposit date:2010-09-16
Release date:2011-05-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:X-ray structural studies of quinone reductase 2 nanomolar range inhibitors.
Protein Sci., 20, 2011
6IK5
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BU of 6ik5 by Molmil
Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with galactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Matsuyama, K, Nakae, S, Igarashi, K, Tada, T, Ishimaru, M.
Deposit date:2018-10-15
Release date:2018-11-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation.
Planta, 252, 2020
3P6J
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BU of 3p6j by Molmil
Crystal structure of Symfoil-4T Permutation #3: de novo designed beta-trefoil architecture with symmetric primary structure
Descriptor: de novo designed beta-trefoil architecture with symmetric primary structure
Authors:Blaber, M, Lee, J.
Deposit date:2010-10-11
Release date:2011-10-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Permutations study of de novo designed symmetric beta-trefoil architecture
To be Published
3EIS
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BU of 3eis by Molmil
Crystal Structure of Arylmalonate Decarboxylase
Descriptor: Arylmalonate decarboxylase, GLYCEROL, SULFATE ION
Authors:Nakasako, M, Obata, R, Miyamoto, K, Ohta, H.
Deposit date:2008-09-17
Release date:2009-09-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis of the Enantioselective Decarboxylation by Arylmalonate Decarboxylase
To be Published
1I2V
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BU of 1i2v by Molmil
NMR SOLUTION STRUCTURES OF AN ANTIFUNGAL AND ANTIBACTERIAL MUTANT OF HELIOMICIN
Descriptor: DEFENSIN HELIOMICIN
Authors:Lamberty, M, Caille, A, Landon, C, Tassin-Moindrot, S, Hetru, C, Bulet, P, Vovelle, F.
Deposit date:2001-02-12
Release date:2002-02-12
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Solution structures of the antifungal heliomicin and a selected variant with both antibacterial and antifungal activities.
Biochemistry, 40, 2001
6RS6
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BU of 6rs6 by Molmil
X-ray crystal structure of LsAA9B
Descriptor: AA9, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Frandsen, K.E.H, Tovborg, M, Poulsen, J.C.N, Johansen, K.S, Lo Leggio, L.
Deposit date:2019-05-21
Release date:2019-09-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.
J.Biol.Chem., 294, 2019
4MUY
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BU of 4muy by Molmil
IspH in complex with pyridin-4-ylmethyl diphosphate
Descriptor: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-4-ylmethyl trihydrogen diphosphate
Authors:Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M.
Deposit date:2013-09-23
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH.
J.Am.Chem.Soc., 136, 2014
3TUL
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BU of 3tul by Molmil
Crystal structure of N-terminal region of Type III Secretion Major Translocator SipB (residues 82-226)
Descriptor: Cell invasion protein sipB
Authors:Barta, M.L, Dickenson, N.E, Patel, M, Keightley, J.A, Picking, W.D, Picking, W.L, Geisbrecht, B.V.
Deposit date:2011-09-16
Release date:2012-02-15
Last modified:2012-03-28
Method:X-RAY DIFFRACTION (2.793 Å)
Cite:The Structures of Coiled-Coil Domains from Type III Secretion System Translocators Reveal Homology to Pore-Forming Toxins.
J.Mol.Biol., 417, 2012
1I2Y
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BU of 1i2y by Molmil
1.66 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMINE FORM
Descriptor: DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3'), SPERMINE
Authors:Tereshko, V, Wallace, S, Usman, N, Wincott, F, Egli, M.
Deposit date:2001-02-12
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid.
RNA, 7, 2001
3E7J
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BU of 3e7j by Molmil
HeparinaseII H202A/Y257A double mutant complexed with a heparan sulfate tetrasaccharide substrate
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Heparinase II protein, ...
Authors:Shaya, D, Cygler, M.
Deposit date:2008-08-18
Release date:2008-12-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Catalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate.
J.Biol.Chem., 285, 2010
3EA6
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BU of 3ea6 by Molmil
Atomic resolution of crystal structure of SEK
Descriptor: IODIDE ION, Staphylococcal enterotoxin K, ZINC ION
Authors:Shi, K, Huseby, M, Schlievert, P.M, Ohlendorf, D.H, Earhart, C.A.
Deposit date:2008-08-24
Release date:2009-06-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Structural Studies of an Emerging Pyrogenic Superantigen, SEK
To be Published
1I4E
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BU of 1i4e by Molmil
CRYSTAL STRUCTURE OF THE CASPASE-8/P35 COMPLEX
Descriptor: Caspase-8, Early 35 kDa protein
Authors:Xu, G, Cirilli, M, Huang, Y, Rich, R.L, Myszka, D.G, Wu, H.
Deposit date:2001-02-20
Release date:2001-03-28
Last modified:2013-09-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Covalent inhibition revealed by the crystal structure of the caspase-8/p35 complex.
Nature, 410, 2001
4I1K
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BU of 4i1k by Molmil
Crystal Structure of VRN1 (Residues 208-341)
Descriptor: B3 domain-containing transcription factor VRN1, CHLORIDE ION
Authors:King, G, Chanson, A.H, McCallum, E.J, Ohme-Takagi, M, Byriel, K, Hill, J.M, Martin, J.L, Mylne, J.S.
Deposit date:2012-11-21
Release date:2012-12-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Arabidopsis B3 Domain Protein VERNALIZATION1 (VRN1) Is Involved in Processes Essential for Development, with Structural and Mutational Studies Revealing Its DNA-binding Surface.
J.Biol.Chem., 288, 2013
3P8P
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BU of 3p8p by Molmil
Crystal Structure of Human Dimethylarginine Dimethylaminohydrolase-1 (DDAH-1) variant C274S bound with N5-(1-iminopentyl)-L-ornithine
Descriptor: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1, N~5~-[(1E)-pentanimidoyl]-L-ornithine
Authors:Monzingo, A.F, Lluis, M, Wang, Y, Fast, W, Robertus, J.D.
Deposit date:2010-10-14
Release date:2010-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Characterization of C-Alkyl Amidines as Bioavailable Covalent Reversible Inhibitors of Human DDAH-1.
Chemmedchem, 6, 2011
4I2A
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BU of 4i2a by Molmil
Binary complex of mouse TdT with ssDNA in absence of divalent transition metal ion
Descriptor: 5'-D(*AP*AP*(BRU)P*AP*A)-3', DNA nucleotidylexotransferase, MAGNESIUM ION, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-11-21
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
6IC2
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BU of 6ic2 by Molmil
Polypharmacology of Epacadostat: a Potent and Selective Inhibitor of the Tumor Associated Carbonic Anhydrases IX and XII
Descriptor: Carbonic anhydrase 2, N-(3-bromo-4-fluorophenyl)-N'-hydroxy-4-{[2-(sulfamoylamino)ethyl]amino}-1,2,5-oxadiazole-3-carboximidamide, ZINC ION
Authors:Angeli, A, Ferraroni, M, Supuran, C.T, Carta, F.
Deposit date:2018-12-01
Release date:2019-05-15
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Polypharmacology of epacadostat: a potent and selective inhibitor of the tumor associated carbonic anhydrases IX and XII.
Chem.Commun.(Camb.), 55, 2019
3OY3
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BU of 3oy3 by Molmil
Crystal structure of ABL T315I mutant kinase domain bound with a DFG-out inhibitor AP24589
Descriptor: 5-[(5-{[4-{[4-(2-hydroxyethyl)piperazin-1-yl]methyl}-3-(trifluoromethyl)phenyl]carbamoyl}-2-methylphenyl)ethynyl]-1-methyl-1H-imidazole-2-carboxamide, Tyrosine-protein kinase ABL1
Authors:Zhou, T, Commodore, L, Huang, W.S, Wang, Y, Thomas, M, Keats, J, Xu, Q, Rivera, V, Shakespeare, W.C, Clackson, T, Dalgarno, D.C, Zhu, X.
Deposit date:2010-09-22
Release date:2010-12-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Mechanism of the Pan-BCR-ABL Inhibitor Ponatinib (AP24534): Lessons for Overcoming Kinase Inhibitor Resistance.
Chem.Biol.Drug Des., 77, 2011
4I2B
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BU of 4i2b by Molmil
Ternary complex of mouse TdT with ssDNA and AMPcPP
Descriptor: 5'-D(P*AP*AP*AP*AP*A)-3', DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA nucleotidylexotransferase, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-11-21
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
2YN3
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BU of 2yn3 by Molmil
Structural insight into the giant calcium-binding adhesin SiiE: implications for the adhesion of Salmonella enterica to polarized epithelial cells
Descriptor: CALCIUM ION, IODIDE ION, PHOSPHATE ION, ...
Authors:Griessl, M.H, Schmid, B, Kassler, K, Braunsmann, C, Ritter, R, Barlag, B, Sturm, K.U, Danzer, C, Wagner, C, Schaeffer, T.E, Sticht, H, Hensel, M, Muller, Y.A.
Deposit date:2012-10-11
Release date:2013-04-03
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural Insight Into the Giant Ca(2+)-Binding Adhesin Siie: Implications for the Adhesion of Salmonella Enterica to Polarized Epithelial Cells.
Structure, 21, 2013

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