Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42880 件

8SK5
DownloadVisualize
BU of 8sk5 by Molmil
Crystal structure of the SARS-CoV-2 neutralizing VHH 7A9 bound to the spike receptor binding domain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, anti-SARS-CoV-2 receptor binding domain VHH
著者Noland, C.L, Pande, K, Zhang, L, Zhou, H, Galli, J, Eddins, M, Gomez-Llorente, Y.
登録日2023-04-18
公開日2023-08-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.011 Å)
主引用文献Discovery and multimerization of cross-reactive single-domain antibodies against SARS-like viruses to enhance potency and address emerging SARS-CoV-2 variants.
Sci Rep, 13, 2023
3KG0
DownloadVisualize
BU of 3kg0 by Molmil
Crystal structure of SnoaB, a cofactor-independent oxygenase from Streptomyces nogalater, determined to 1.7 resolution
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, SnoaB
著者Koskiniemi, H, Grocholski, T, Lindqvist, Y, Mantsala, P, Niemi, J, Schneider, G.
登録日2009-10-28
公開日2010-01-26
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of the cofactor-independent monooxygenase SnoaB from Streptomyces nogalater: implications for the reaction mechanism
Biochemistry, 49, 2010
7S0G
DownloadVisualize
BU of 7s0g by Molmil
Isoproterenol bound beta1 adrenergic receptor in complex with heterotrimeric Gi/s chimera protein
分子名称: Beta1-Adrenergic Receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Paknejad, N, Alegre, K.O, Su, M, Lou, J.S, Huang, J, Jordan, K.D, Eng, E.T, Meyerson, J.R, Hite, R.K, Huang, X.Y.
登録日2021-08-30
公開日2021-11-17
最終更新日2021-12-01
実験手法ELECTRON MICROSCOPY (3.86 Å)
主引用文献Structural basis and mechanism of activation of two different families of G proteins by the same GPCR.
Nat.Struct.Mol.Biol., 28, 2021
3TKG
DownloadVisualize
BU of 3tkg by Molmil
crystal structure of HIV model protease precursor/saquinavir complex
分子名称: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide, CHLORIDE ION, GLYCEROL, ...
著者Agniswamy, J, Sayer, J, Weber, I, Louis, J.
登録日2011-08-26
公開日2012-04-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Terminal interface conformations modulate dimer stability prior to amino terminal autoprocessing of HIV-1 protease.
Biochemistry, 51, 2012
5KQR
DownloadVisualize
BU of 5kqr by Molmil
Structure of NS5 methyltransferase from Zika virus bound to S-adenosylmethionine
分子名称: CHLORIDE ION, Methyltransferase, PHOSPHATE ION, ...
著者Jain, R, Coloma, J, Rajashankar, K.R, Aggarwal, A.K.
登録日2016-07-06
公開日2016-09-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.331 Å)
主引用文献Structures of NS5 Methyltransferase from Zika Virus.
Cell Rep, 16, 2016
7S3D
DownloadVisualize
BU of 7s3d by Molmil
Structure of photosystem I with bound ferredoxin from Synechococcus sp. PCC 7335 acclimated to far-red light
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2Fe-2S ferredoxin-type domain-containing protein, ...
著者Gisriel, C.J, Flesher, D.A, Shen, G, Wang, J, Ho, M, Brudvig, G.W, Bryant, D.A.
登録日2021-09-05
公開日2021-11-24
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Structure of a photosystem I-ferredoxin complex from a marine cyanobacterium provides insights into far-red light photoacclimation.
J.Biol.Chem., 298, 2021
1XDF
DownloadVisualize
BU of 1xdf by Molmil
Crystal structure of pathogenesis-related protein LlPR-10.2A from yellow lupine
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, PR10.2A, SODIUM ION
著者Pasternak, O, Biesiadka, J, Dolot, R, Handschuh, L, Bujacz, G, Sikorski, M.M, Jaskolski, M.
登録日2004-09-06
公開日2005-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of a yellow lupin pathogenesis-related PR-10 protein belonging to a novel subclass.
Acta Crystallogr.,Sect.D, 61, 2005
5WTB
DownloadVisualize
BU of 5wtb by Molmil
Complex Structure of Staphylococcus aureus SdrE with human complement factor H
分子名称: Peptide from Complement factor H, Serine-aspartate repeat-containing protein E
著者Wu, M, Zhang, Y, Hang, T, Wang, C, Yang, Y, Zang, J, Zhang, M, Zhang, X.
登録日2016-12-10
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Staphylococcus aureus SdrE captures complement factor H's C-terminus via a novel 'close, dock, lock and latch' mechanism for complement evasion
Biochem. J., 474, 2017
2PJL
DownloadVisualize
BU of 2pjl by Molmil
Crystal Structure of Human Estrogen-Related Receptor alpha in Complex with a Synthetic Inverse Agonist reveals its Novel Molecular Mechanism
分子名称: 1-CYCLOHEXYL-N-{[1-(4-METHYLPHENYL)-1H-INDOL-3-YL]METHYL}METHANAMINE, Steroid hormone receptor ERR1
著者Kallen, J.
登録日2007-04-16
公開日2007-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of human estrogen-related receptor alpha in complex with a synthetic inverse agonist reveals its novel molecular mechanism.
J.Biol.Chem., 282, 2007
5KPP
DownloadVisualize
BU of 5kpp by Molmil
Structure of human PARP1 catalytic domain bound to a quinazoline-2,4(1H,3H)-dione inhibitor
分子名称: 1-[[4-fluoranyl-3-[(3R)-3-methyl-4-[2,2,2-tris(fluoranyl)ethyl]piperazin-1-yl]carbonyl-phenyl]methyl]quinazoline-2,4-dione, Poly [ADP-ribose] polymerase 1
著者Cao, R, Wang, Y.L, Zhou, J, Huang, N, Xu, B.L.
登録日2016-07-05
公開日2016-11-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structure of human PARP1 catalytic domain bound to a quinazoline-2,4(1H,3H)-dione inhibitor
To Be Published
7KBH
DownloadVisualize
BU of 7kbh by Molmil
Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 16)
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Histone deacetylase 2, ...
著者Klein, D.J, Liu, J.
登録日2020-10-02
公開日2020-12-30
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Discovery of Highly Selective and Potent HDAC3 Inhibitors Based on a 2-Substituted Benzamide Zinc Binding Group.
Acs Med.Chem.Lett., 11, 2020
2PMN
DownloadVisualize
BU of 2pmn by Molmil
Crystal structure of PfPK7 in complex with an ATP-site inhibitor
分子名称: 4-(6-{[(1S)-1-(HYDROXYMETHYL)-2-METHYLPROPYL]AMINO}IMIDAZO[1,2-B]PYRIDAZIN-3-YL)BENZONITRILE, Ser/Thr protein kinase, putative
著者Merckx, A, Echalier, A, Noble, M, Endicott, J.
登録日2007-04-23
公開日2008-01-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structures of P. falciparum protein kinase 7 identify an activation motif and leads for inhibitor design.
Structure, 16, 2008
8URK
DownloadVisualize
BU of 8urk by Molmil
Crystal structure of DNA N6-Adenine Methyltransferase M.BceJIV from Burkholderia cenocepacia in complex with duplex DNA substrates
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA1, DNA2, ...
著者Kottur, J, Quintana-Feliciano, R, Aggarwal, A.K.
登録日2023-10-26
公開日2024-09-11
最終更新日2024-09-25
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Burkholderia cenocepacia epigenetic regulator M.BceJIV simultaneously engages two DNA recognition sequences for methylation.
Nat Commun, 15, 2024
5KR6
DownloadVisualize
BU of 5kr6 by Molmil
Directed Evolution of Transaminases By Ancestral Reconstruction. Using Old Proteins for New Chemistries
分子名称: 4-aminobutyrate transaminase, PYRIDOXAL-5'-PHOSPHATE
著者Wilding, M, Newman, J, Peat, T.S, Scott, C.
登録日2016-07-07
公開日2017-07-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Reverse engineering: transaminase biocatalyst development using ancestral sequence reconstruction
Green Chemistry, 19, 2017
3R4U
DownloadVisualize
BU of 3r4u by Molmil
Cell entry of botulinum neurotoxin type C is dependent upon interaction with two ganglioside molecules
分子名称: Botulinum neurotoxin type C1
著者Strotmeier, J, Gu, S, Jutzi, S, Mahrhold, S, Zhou, J, Pich, A, Bigalke, H, Rummel, A, Jin, R, Binz, T.
登録日2011-03-17
公開日2011-06-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The biological activity of botulinum neurotoxin type C is dependent upon novel types of ganglioside binding sites.
Mol.Microbiol., 81, 2011
7S3G
DownloadVisualize
BU of 7s3g by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with citrate at the catalytic center
分子名称: CITRIC ACID, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
登録日2021-09-06
公開日2021-12-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
5WZJ
DownloadVisualize
BU of 5wzj by Molmil
Structure of APUM23-GGAUUUGACGG
分子名称: Pumilio homolog 23, RNA (5'-R(*GP*GP*AP*UP*UP*UP*GP*AP*CP*GP*G)-3')
著者Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y.
登録日2017-01-18
公開日2017-09-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Structural basis for the specific recognition of 18S rRNA by APUM23.
Nucleic Acids Res., 45, 2017
8D1U
DownloadVisualize
BU of 8d1u by Molmil
E. coli beta-ketoacyl-[acyl carrier protein] synthase III (FabH) with an acetylated cysteine and in complex with oxa(dethia)-Coenzyme A
分子名称: 3-oxoacyl-[acyl-carrier-protein] synthase 3, CHLORIDE ION, oxa(dethia)-CoA
著者Benjamin, A.B, Stunkard, L.M, Ling, J, Nice, J.N, Lohman, J.R.
登録日2022-05-27
公開日2022-06-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.302 Å)
主引用文献Structures of chloramphenicol acetyltransferase III and Escherichia coli beta-ketoacylsynthase III co-crystallized with partially hydrolysed acetyl-oxa(dethia)CoA.
Acta Crystallogr.,Sect.F, 79, 2023
7JNA
DownloadVisualize
BU of 7jna by Molmil
Cryo-EM structure of human proton-activated chloride channel PAC at pH 8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Proton-activated chloride channel
著者Lu, W, Ruan, R, Du, J.
登録日2020-08-04
公開日2020-11-11
最終更新日2020-12-23
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structures and pH-sensing mechanism of the proton-activated chloride channel.
Nature, 588, 2020
7W7Q
DownloadVisualize
BU of 7w7q by Molmil
Crystal structure of 1F11S antibody(ScFv)
分子名称: 1F11S antibody
著者Kim, B.-W, Park, J, Woo, J, Lee, W.-K.
登録日2021-12-06
公開日2022-12-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of 1F11S antibody(ScFv)
To Be Published
8UCP
DownloadVisualize
BU of 8ucp by Molmil
Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Serotonin
分子名称: COPPER (II) ION, Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, ...
著者Ye, J, Liu, B, Li, W.
登録日2023-09-26
公開日2024-10-09
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Serotonin
To Be Published
8UCN
DownloadVisualize
BU of 8ucn by Molmil
Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Histamine
分子名称: COPPER (II) ION, Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, ...
著者Ye, J, Liu, B, Li, W.
登録日2023-09-26
公開日2024-10-09
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Komagataella pastoris Cytochrome c oxidase in complex with human VMAT2 and Histamine
To Be Published
7SF6
DownloadVisualize
BU of 7sf6 by Molmil
Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense
分子名称: 1,2-ETHANEDIOL, 2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID, CHLORIDE ION, ...
著者Kim, Y, Patel, H.P, Nordquist, K.A, Schaab, K.M, Sha, J, Babnigg, G, Bond, A.H, Joachimiak, A, Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)
登録日2021-10-03
公開日2021-12-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Crystal Structure of Siderophore Binding Protein FatB from Desulfitobacterium hafniense
To Be Published
8UCK
DownloadVisualize
BU of 8uck by Molmil
Komagataella pastoris Cytochrome c oxidase (9 subunits) in complex with human VMAT2
分子名称: COPPER (II) ION, Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, ...
著者Ye, J, Liu, B, Li, W.
登録日2023-09-26
公開日2024-10-09
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Komagataella pastoris Cytochrome c oxidase (9 subunits) in complex with human VMAT2
To Be Published
5KLQ
DownloadVisualize
BU of 5klq by Molmil
Crystal structure of HopZ1a in complex with IP6 and CoA
分子名称: CITRIC ACID, COENZYME A, INOSITOL HEXAKISPHOSPHATE, ...
著者Zhang, Z.-M, Song, J.
登録日2016-06-24
公開日2016-08-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structure of a pathogen effector reveals the enzymatic mechanism of a novel acetyltransferase family.
Nat.Struct.Mol.Biol., 23, 2016

226262

件を2024-10-16に公開中

PDB statisticsPDBj update infoContact PDBjnumon