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PDB: 277 件
2ZVM
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BU of 2zvm by Molmil
Crystal structure of PCNA in complex with DNA polymerase iota fragment
分子名称: DNA polymerase iota, Proliferating cell nuclear antigen
著者Hishiki, A, Hashimoto, H, Hanafusa, T, Kamei, K, Ohashi, E, Shimizu, T, Ohmori, H, Sato, M.
登録日2008-11-11
公開日2009-02-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen
J.Biol.Chem., 284, 2009
2ZFU
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BU of 2zfu by Molmil
Structure of the methyltransferase-like domain of nucleomethylin
分子名称: Cerebral protein 1, S-ADENOSYL-L-HOMOCYSTEINE
著者Minami, H, Hashimoto, H, Murayama, A, Yanagisawa, J, Sato, M, Shimizu, T.
登録日2008-01-14
公開日2008-12-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Epigenetic control of rDNA loci in response to intracellular energy status
Cell(Cambridge,Mass.), 133, 2008
2Z5M
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BU of 2z5m by Molmil
Complex of Transportin 1 with TAP NLS, crystal form 2
分子名称: Nuclear RNA export factor 1, Transportin-1
著者Imasaki, T, Shimizu, T, Hashimoto, H, Hidaka, Y, Kose, S, Imamoto, N, Yamada, M, Sato, M.
登録日2007-07-14
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for substrate recognition and dissociation by human transportin 1
Mol.Cell, 28, 2007
3WEZ
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BU of 3wez by Molmil
Crystal structure of human beta-galactosidase in complex with NOEV
分子名称: (1S,2S,3S,6R)-4-(hydroxymethyl)-6-(octylamino)cyclohex-4-ene-1,2,3-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Suzuki, H, Ohto, U, Shimizu, T.
登録日2013-07-16
公開日2014-04-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published
3WF3
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BU of 3wf3 by Molmil
Crystal structure of human beta-galactosidase mutant I51T in complex with Galactose
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
著者Suzuki, H, Ohto, U, Shimizu, T.
登録日2013-07-16
公開日2014-04-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published
3W3N
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BU of 3w3n by Molmil
Crystal structure of human TLR8 in complex with Resiquimod (R848) crystal form 3
分子名称: 1-[4-amino-2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-1-yl]-2-methylpropan-2-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2012-12-22
公開日2013-04-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands
Science, 339, 2013
4QBZ
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BU of 4qbz by Molmil
Crystal structure of human TLR8 in complex with DS-802
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-butyl[1,3]oxazolo[4,5-c]quinolin-4-amine, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2014-05-09
公開日2014-10-22
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Determinants of Activity at Human Toll-like Receptors 7 and 8: Quantitative Structure-Activity Relationship (QSAR) of Diverse Heterocyclic Scaffolds
J.Med.Chem., 57, 2014
3WF1
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BU of 3wf1 by Molmil
Crystal structure of human beta-galactosidase in complex with 6S-NBI-GJ
分子名称: (3E,5S,6R,7S,8S,8aS)-3-(butylimino)hexahydro[1,3]thiazolo[3,4-a]pyridine-5,6,7,8-tetrol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Suzuki, H, Ohto, U, Shimizu, T.
登録日2013-07-16
公開日2014-04-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published
3W3J
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BU of 3w3j by Molmil
Crystal structure of human TLR8 in complex with CL097
分子名称: 2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-4-amine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2012-12-22
公開日2013-04-03
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands
Science, 339, 2013
3W3G
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BU of 3w3g by Molmil
Crystal structure of human TLR8 (unliganded form)
分子名称: (R,R)-2,3-BUTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2012-12-21
公開日2013-04-03
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands
Science, 339, 2013
3VLA
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BU of 3vla by Molmil
Crystal structure of edgp
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, EDGP
著者Yoshizawa, T, Shimizu, T, Hirano, H, Sato, M, Hashimoto, H.
登録日2011-11-30
公開日2012-04-18
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Structural basis for inhibition of xyloglucan-specific endo-beta-1,4-glucanase (XEG) by XEG-protein inhibitor
J.Biol.Chem., 287, 2012
4R6A
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BU of 4r6a by Molmil
Crystal structure of human TLR8 in complex with Hybrid-2
分子名称: 1-(4-amino-2-butyl-1H-imidazo[4,5-c]quinolin-1-yl)-2-methylpropan-2-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 8, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2014-08-22
公開日2015-08-26
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Hybrid-2: AnImidazoquinoline Dual Toll-like receptor 7/8 Agonist that Potently Activates Cytokine Production by Human Newborn and Adult Leukocytes
To be Published
3WF4
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BU of 3wf4 by Molmil
Crystal structure of human beta-galactosidase mutant I51T in complex with 6S-NBI-DGJ
分子名称: (3Z,6S,7R,8S,8aS)-3-(butylimino)hexahydro[1,3]thiazolo[3,4-a]pyridine-6,7,8-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Suzuki, H, Ohto, U, Shimizu, T.
登録日2013-07-16
公開日2014-04-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published
3WPE
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BU of 3wpe by Molmil
Crystal structure of bovine TLR9 in complex with agonistic DNA1668_12mer
分子名称: DNA (5'-D(*CP*AP*TP*GP*AP*CP*GP*TP*TP*CP*CP*T)-3'), Toll-like receptor 9
著者Ohto, U, Tanji, H, Shimizu, T.
登録日2014-01-11
公開日2015-02-11
最終更新日2015-05-06
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature, 520, 2015
3W3L
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BU of 3w3l by Molmil
Crystal structure of human TLR8 in complex with Resiquimod (R848) crystal form 1
分子名称: 1-[4-amino-2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-1-yl]-2-methylpropan-2-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2012-12-22
公開日2013-04-03
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands
Science, 339, 2013
3WF2
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BU of 3wf2 by Molmil
Crystal structure of human beta-galactosidase in complex with NBT-DGJ
分子名称: (2R,3S,4R,5S)-N-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carbothioamide, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Suzuki, H, Ohto, U, Shimizu, T.
登録日2013-07-16
公開日2014-04-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published
3WPC
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BU of 3wpc by Molmil
Crystal structure of horse TLR9 in complex with agonistic DNA1668_12mer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*AP*TP*GP*AP*CP*GP*TP*TP*CP*CP*T)-3'), ...
著者Ohto, U, Tanji, H, Shimizu, T.
登録日2014-01-11
公開日2015-02-11
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature, 520, 2015
3WF0
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BU of 3wf0 by Molmil
Crystal structure of human beta-galactosidase in complex with 6S-NBI-DGJ
分子名称: (3Z,6S,7R,8S,8aS)-3-(butylimino)hexahydro[1,3]thiazolo[3,4-a]pyridine-6,7,8-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Suzuki, H, Ohto, U, Shimizu, T.
登録日2013-07-16
公開日2014-04-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published
3T6Q
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BU of 3t6q by Molmil
Crystal structure of mouse RP105/MD-1 complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CD180 antigen, ...
著者Ohto, U, Shimizu, T.
登録日2011-07-28
公開日2011-11-09
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of Mouse and Human RP105/MD-1 Complexes Reveal Unique Dimer Organization of the Toll-Like Receptor Family.
J.Mol.Biol., 413, 2011
3VU7
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BU of 3vu7 by Molmil
Crystal structure of REV1-REV7-REV3 ternary complex
分子名称: DNA polymerase zeta catalytic subunit, DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B
著者Kikuchi, S, Hara, K, Shimizu, T, Sato, M, Hashimoto, H.
登録日2012-06-20
公開日2012-08-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of recruitment of DNA polymerase [zeta] by interaction between REV1 and REV7 proteins
J.Biol.Chem., 287, 2012
3VJI
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BU of 3vji by Molmil
Human PPAR gamma ligand binding domain in complex with JKPL53
分子名称: (2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid, Peroxisome proliferator-activated receptor gamma
著者Tomioka, D, Kuwabara, N, Hashimoto, H, Sato, M, Shimizu, T.
登録日2011-10-20
公開日2012-08-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype.
J.Med.Chem., 55, 2012
3WPF
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BU of 3wpf by Molmil
Crystal structure of mouse TLR9 (unliganded form)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Toll-like receptor 9
著者Ohto, U, Shimizu, T.
登録日2014-01-11
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.959 Å)
主引用文献Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature, 520, 2015
3W3K
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BU of 3w3k by Molmil
Crystal structure of human TLR8 in complex with CL075
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-propyl[1,3]thiazolo[4,5-c]quinolin-4-amine, ...
著者Tanji, H, Ohto, U, Shimizu, T.
登録日2012-12-22
公開日2013-04-03
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural reorganization of the Toll-like receptor 8 dimer induced by agonistic ligands
Science, 339, 2013
3WPB
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BU of 3wpb by Molmil
Crystal structure of horse TLR9 (unliganded form)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, ...
著者Ohto, U, Tanji, H, Shimizu, T.
登録日2014-01-11
公開日2015-02-11
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature, 520, 2015
3WPD
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BU of 3wpd by Molmil
Crystal structure of horse TLR9 in complex with inhibitory DNA4084
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*G)-3'), ...
著者Ohto, U, Tanji, H, Shimizu, T.
登録日2014-01-11
公開日2015-02-11
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9
Nature, 520, 2015

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