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PDB: 225 件
8SRG
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BU of 8srg by Molmil
Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate
分子名称: 5-O-phosphono-beta-D-ribofuranose, ADENOSINE MONOPHOSPHATE, CHOLESTEROL, ...
著者Huang, Y, Kumar, S, Lu, W, Du, J.
登録日2023-05-05
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
8SRF
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BU of 8srf by Molmil
Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium, ADP-ribose, Adenosine monophosphate, and Ribose-5-phosphate, closed state
分子名称: 5-O-phosphono-beta-D-ribofuranose, ADENOSINE MONOPHOSPHATE, ADENOSINE-5-DIPHOSPHORIBOSE, ...
著者Huang, Y, Kumar, S, Lu, W, Du, J.
登録日2023-05-05
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (2.52 Å)
主引用文献Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
8SRD
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BU of 8srd by Molmil
Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium and ADP-ribose, open state
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, CHOLESTEROL, MAGNESIUM ION, ...
著者Huang, Y, Kumar, S, Lu, W, Du, J.
登録日2023-05-05
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (2.91 Å)
主引用文献Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
4H0N
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BU of 4h0n by Molmil
Crystal structure of Spodoptera frugiperda DNMT2 E260A/E261A/K263A mutant
分子名称: CALCIUM ION, DNMT2, S-ADENOSYL-L-HOMOCYSTEINE
著者Li, S, Du, J, Yang, H, Yin, J, Zhong, J, Ding, J.
登録日2012-09-09
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.712 Å)
主引用文献Functional and structural characterization of DNMT2 from Spodoptera frugiperda.
J Mol Cell Biol, 5, 2013
8TTM
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BU of 8ttm by Molmil
IgG1 Fc Heterodimer combYSelect1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain
著者Azzam, T, Du, J.J, Sundberg, E.J.
登録日2023-08-14
公開日2024-06-26
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers.
Sci Adv, 10, 2024
8TUD
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BU of 8tud by Molmil
IgG1 Fc Heterodimer combYSelect2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin gamma-1 heavy chain
著者Azzam, T, Du, J.J, Sundberg, E.J.
登録日2023-08-16
公開日2024-06-26
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Combinatorially restricted computational design of protein-protein interfaces to produce IgG heterodimers.
Sci Adv, 10, 2024
6WBG
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BU of 6wbg by Molmil
Cryo-EM structure of human Pannexin 1 channel with its C-terminal tail cleaved by caspase-7
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
6WBF
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BU of 6wbf by Molmil
Cryo-EM structure of wild type human Pannexin 1 channel
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
6WBM
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BU of 6wbm by Molmil
Cryo-EM structure of human Pannexin 1 channel N255A mutant
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CHOLESTEROL, DIACYL GLYCEROL, ...
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2021-06-30
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
4IUR
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BU of 4iur by Molmil
crystal structure of SHH1 SAWADEE domain in complex with H3K9me3 peptide
分子名称: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ...
著者Patel, D.J, Du, J.
登録日2013-01-21
公開日2013-05-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.
Nature, 498, 2013
3Q7K
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BU of 3q7k by Molmil
Formate Channel FocA from Salmonella typhimurium
分子名称: FORMIC ACID, Probable formate transporter
著者Lue, W, Du, J, Wacker, T, Gerbig-Smentek, E, Andrade, S.L.A, Einsle, O.
登録日2011-01-05
公開日2011-04-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献pH-dependent gating in a FocA formate channel
Science, 332, 2011
6UIW
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BU of 6uiw by Molmil
Cryo-EM structure of human CALHM2 in a ruthenium red-bound inhibited state
分子名称: Calcium homeostasis modulator protein 2, ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)
著者Lu, W, Du, J, Choi, W.
登録日2019-10-01
公開日2019-11-27
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献The structures and gating mechanism of human calcium homeostasis modulator 2.
Nature, 576, 2019
3FGG
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BU of 3fgg by Molmil
Crystal Structure of Putative ECF-type Sigma Factor Negative Effector from Bacillus cereus
分子名称: GLYCEROL, ZINC ION, uncharacterized protein BCE2196
著者Kim, Y, Nocek, B, Maltseva, N, Joachimiak, G, Du, J, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2008-12-05
公開日2009-01-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Putative ECF-type Sigma Factor Negative Effector from Bacillus cereus
To be Published
5ZNP
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BU of 5znp by Molmil
Crystal structure of PtSHL in complex with an H3K4me3 peptide
分子名称: 15-mer peptide from Histone H3.2, SHORT LIFE family protein, ZINC ION
著者Lv, X, Du, J.
登録日2018-04-10
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL.
Nat Commun, 9, 2018
8HIL
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BU of 8hil by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom
分子名称: DNA-dependent RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, DNA-directed RNA polymerase subunit, ...
著者Du, X, Xie, G, Hu, H, Du, J.
登録日2022-11-20
公開日2023-03-22
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
8HIM
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BU of 8him by Molmil
A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom
分子名称: DNA (34-MER), DNA-directed RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, ...
著者Hu, H, Xie, G, Du, X, Du, J.
登録日2022-11-21
公開日2023-03-22
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure and mechanism of the plant RNA polymerase V.
Science, 379, 2023
6WBL
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BU of 6wbl by Molmil
Cryo-EM structure of human Pannexin 1 channel with deletion of N-terminal helix and C-terminal tail, in complex with CBX
分子名称: CARBENOXOLONE, Pannexin-1
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (5.13 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
6WBI
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BU of 6wbi by Molmil
Cryo-EM structure of human Pannexin 1 channel with its C-terminal tail cleaved by caspase-7, in complex with CBX
分子名称: CARBENOXOLONE, Pannexin-1
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2020-09-09
実験手法ELECTRON MICROSCOPY (4.39 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
6WBK
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BU of 6wbk by Molmil
Cryo-EM structure of human Pannexin 1 channel with deletion of N-terminal helix and C-terminal tail
分子名称: Pannexin-1
著者Lu, W, Du, J, Ruan, Z.
登録日2020-03-26
公開日2020-06-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (6.01 Å)
主引用文献Structures of human pannexin 1 reveal ion pathways and mechanism of gating.
Nature, 584, 2020
5XO1
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BU of 5xo1 by Molmil
Crystal structure of the isochorismatase domain of VabB from Vibrio anguillarum 775
分子名称: Isochorismate lyase
著者Ma, Q, Du, J.
登録日2017-05-25
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Crystal structures of the isochorismatase domains from Vibrio anguillarum.
Biochem.Biophys.Res.Commun., 490, 2017
6UIV
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BU of 6uiv by Molmil
Cryo-EM structure of human CALHM2 in an active/open state
分子名称: Calcium homeostasis modulator protein 2
著者Lu, W, Du, J, Choi, W.
登録日2019-10-01
公開日2019-11-27
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The structures and gating mechanism of human calcium homeostasis modulator 2.
Nature, 576, 2019
6UIX
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BU of 6uix by Molmil
Cryo-EM structure of human CALHM2 gap junction
分子名称: Calcium homeostasis modulator protein 2
著者Lu, W, Du, J, Choi, W.
登録日2019-10-01
公開日2019-11-27
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献The structures and gating mechanism of human calcium homeostasis modulator 2.
Nature, 576, 2019
7EF1
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BU of 7ef1 by Molmil
crystal structure of maize SHH2 SAWADEE domain in complex with and H3K9me1 peptide
分子名称: HB transcription factor, Histone H3.2, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
7EF2
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BU of 7ef2 by Molmil
Crystal structure of maize SHH2 SAWADEE domain in complex with an H3K9me3 peptide
分子名称: HB transcription factor, Histone H3.2, ZINC ION
著者Wang, Y, Du, J.
登録日2021-03-20
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2.
J Integr Plant Biol, 63, 2021
5UP2
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BU of 5up2 by Molmil
Triheteromeric NMDA receptor GluN1/GluN2A/GluN2B in complex with glycine, glutamate, Ro 25-6981, MK-801 and a GluN2B-specific Fab, at pH 6.5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GluN2B-specific Fab, ...
著者Lu, W, Du, J, Goehring, A, Gouaux, E.
登録日2017-02-01
公開日2017-03-22
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Cryo-EM structures of the triheteromeric NMDA receptor and its allosteric modulation.
Science, 355, 2017

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