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PDB: 266 results

4V53
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BU of 4v53 by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Descriptor: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ...
Authors:Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D.
Deposit date:2007-06-16
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.54 Å)
Cite:Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Nat.Struct.Mol.Biol., 14, 2007
4V55
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BU of 4v55 by Molmil
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).
Descriptor: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ...
Authors:Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D.
Deposit date:2007-06-17
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.
Nat.Struct.Mol.Biol., 14, 2007
8AKU
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BU of 8aku by Molmil
250 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKY
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BU of 8aky by Molmil
290 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKZ
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BU of 8akz by Molmil
320 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKQ
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BU of 8akq by Molmil
180 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKR
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BU of 8akr by Molmil
200 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKS
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BU of 8aks by Molmil
215 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKT
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BU of 8akt by Molmil
235 A SynPspA rod after incubation with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AL0
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BU of 8al0 by Molmil
365 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKX
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BU of 8akx by Molmil
305 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKV
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BU of 8akv by Molmil
270 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8AKW
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BU of 8akw by Molmil
280 A SynPspA rod after incubation with ATP
Descriptor: Chloroplast membrane-associated 30 kD protein
Authors:Junglas, B, Hudina, E, Schoennenbeck, P, Ritter, I, Santiago-Schuebel, B, Huesgen, P, Sachse, C.
Deposit date:2022-07-31
Release date:2024-02-14
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Structural plasticity of bacterial ESCRT-III protein PspA in higher-order assemblies.
Nat.Struct.Mol.Biol., 2024
8C07
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BU of 8c07 by Molmil
Structure of HECT E3 UBR5 forming K48 linked Ubiquitin chains
Descriptor: 5-azanylpentan-2-one, E3 ubiquitin-protein ligase UBR5, Polyubiquitin-B
Authors:Hehl, L.A, Prabu, J.R, Schulman, B.A.
Deposit date:2022-12-16
Release date:2023-08-23
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5.
Nat.Chem.Biol., 20, 2024
7OD1
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BU of 7od1 by Molmil
Crystal structure of RBR ubiquitin ligase ARIH2
Descriptor: E3 ubiquitin-protein ligase ARIH2, ZINC ION
Authors:Kostrhon, S.P, Prabu, J.R, Schulman, B.A.
Deposit date:2021-04-28
Release date:2021-09-15
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:CUL5-ARIH2 E3-E3 ubiquitin ligase structure reveals cullin-specific NEDD8 activation.
Nat.Chem.Biol., 17, 2021
6WY6
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BU of 6wy6 by Molmil
Crystal structure of S. cerevisiae Atg8 in complex with Ede1 (1220-1247)
Descriptor: Autophagy-related protein 8, EH domain-containing and endocytosis protein 1
Authors:Zheng, Y, Wilfling, F, Baumeister, W, Schulman, B.A.
Deposit date:2020-05-12
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.773 Å)
Cite:A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits.
Mol.Cell, 80, 2020
8C06
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BU of 8c06 by Molmil
Structure of Dimeric HECT E3 Ubiquitin Ligase UBR5
Descriptor: E3 ubiquitin-protein ligase UBR5, ZINC ION
Authors:Hehl, L.A, Prabu, J.R, Schulman, B.A.
Deposit date:2022-12-16
Release date:2023-08-23
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural snapshots along K48-linked ubiquitin chain formation by the HECT E3 UBR5.
Nat.Chem.Biol., 20, 2024
8CAF
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BU of 8caf by Molmil
N8C_Fab3b in complex with NEDD8-CUL1(WHB)
Descriptor: Cullin-1, Fab Heavy Chain, Fab Light Chain, ...
Authors:Duda, D.M, Yanishevski, D, Henneberg, L.T, Schulman, B.A.
Deposit date:2023-01-24
Release date:2023-09-13
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Activity-based profiling of cullin-RING E3 networks by conformation-specific probes.
Nat.Chem.Biol., 19, 2023
7ONI
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BU of 7oni by Molmil
Structure of Neddylated CUL5 C-terminal region-RBX2-ARIH2*
Descriptor: Cullin-5, E3 ubiquitin-protein ligase ARIH2, NEDD8, ...
Authors:Kostrhon, S.P, prabu, J.R, Schulman, B.A.
Deposit date:2021-05-25
Release date:2021-09-15
Last modified:2021-10-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:CUL5-ARIH2 E3-E3 ubiquitin ligase structure reveals cullin-specific NEDD8 activation.
Nat.Chem.Biol., 17, 2021
6NQT
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BU of 6nqt by Molmil
GalNac-T2 soaked with UDP-sugar
Descriptor: MANGANESE (II) ION, Polypeptide N-acetylgalactosaminyltransferase 2, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{R})-3-(hex-5-ynoylamino)-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] hydrogen phosphate
Authors:Fernandez, D, Bertozzi, C.R, Schumann, B, Agbay, A.
Deposit date:2019-01-21
Release date:2020-01-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Bump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells.
Mol.Cell, 78, 2020
7ADO
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BU of 7ado by Molmil
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ...
Authors:Braeuning, B, Prabu, J.R, Miller-Vedam, L.E, Weissman, J.S, Frost, A, Schulman, B.A.
Deposit date:2020-09-15
Release date:2020-12-02
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
7ADP
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BU of 7adp by Molmil
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ER membrane protein complex subunit 10, ...
Authors:Braeuning, B, Prabu, J.R, Miller-Vedam, L.E, Weissman, J.S, Frost, A, Schulman, B.A.
Deposit date:2020-09-15
Release date:2020-12-02
Last modified:2020-12-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
8EBM
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BU of 8ebm by Molmil
Structure of KLHDC2 substrate binding domain bound to KLHDC2's C-degron mimic
Descriptor: ASN-GLN-ARG-PHE-GLY-SER-ASN-ASN-THR-SER-GLY-SER, Kelch domain-containing protein 2
Authors:Scott, D.C, Schulman, B.A.
Deposit date:2022-08-31
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
8EBL
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BU of 8ebl by Molmil
Structure of KLHDC2 substrate binding domain bound to C-degron from EPHB2
Descriptor: GLU-ASP-SER-HIS-LYS-GLU-SER-ASN-ASP-CYS-SER-CYS-GLY-GLY, Kelch domain-containing protein 2
Authors:Scott, D.C, Schulman, B.A.
Deposit date:2022-08-31
Release date:2023-02-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:E3 ligase autoinhibition by C-degron mimicry maintains C-degron substrate fidelity.
Mol.Cell, 83, 2023
6S9O
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BU of 6s9o by Molmil
Designed Armadillo Repeat protein internal Lock1 fused to target peptide KRKRKLKFKR
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, designed Armadillo repeat protein with internal Lock1 fused to target peptide KRKRKLKFKR
Authors:Ernst, P, Zosel, F, Reichen, C, Schuler, B, Pluckthun, A.
Deposit date:2019-07-15
Release date:2020-02-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structure-Guided Design of a Peptide Lock for Modular Peptide Binders.
Acs Chem.Biol., 15, 2020

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PDB entries from 2024-09-18

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