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The structure of bd oxidase from Geobacillus thermodenitrificans
分子名称:	Bd-type quinol oxidase subunit I, Bd-type quinol oxidase subunit II, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, ...
著者	Safarian, S, Mueller, H, Rajendran, C, Preu, J, Ovchinnikov, S, Kusumoto, T, Hirose, T, Langer, J, Sakamoto, J, Michel, H.
登録日	2016-03-12
公開日	2016-05-04
最終更新日	2024-05-08
実験手法	X-RAY DIFFRACTION (3.8 Å)
主引用文献	Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases. Science, 352, 2016

5DOQ

The structure of bd oxidase from Geobacillus thermodenitrificans
分子名称:	Bd-type quinol oxidase subunit I, Bd-type quinol oxidase subunit II, CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, ...
著者	Safarian, S, Mueller, H, Rajendran, C, Preu, J, Ovchinnikov, S, Kusumoto, T, Hirose, T, Langer, J, Sakamoto, J, Michel, H.
登録日	2015-09-11
公開日	2016-05-04
最終更新日	2024-05-08
実験手法	X-RAY DIFFRACTION (3.05 Å)
主引用文献	Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases. Science, 352, 2016

7KXS

Computational design of constitutively active cGAS
分子名称:	Cyclic GMP-AMP synthase, ZINC ION
著者	Dowling, Q, Volkman, H.E, Gray, E.E, Ovchinnikov, S, Cambier, S, Bera, A.K, Bick, M, Kang, A, Stetson, D.B, King, N.P.
登録日	2020-12-04
公開日	2021-12-08
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (2.6 Å)
主引用文献	Computational design of constitutively active cGAS. Nat.Struct.Mol.Biol., 30, 2023

7LZ3

Computational design of constitutively active cGAS
分子名称:	Cyclic GMP-AMP synthase, GLYCEROL, ZINC ION
著者	Dowling, Q, Volkman, H.E, Gray, E.E, Ovchinnikov, S, Cambier, S, Bera, A.K, Bick, M, Kang, A, Stetson, D.B, King, N.P.
登録日	2021-03-08
公開日	2022-03-16
最終更新日	2024-05-22
実験手法	X-RAY DIFFRACTION (2.18 Å)
主引用文献	Computational design of constitutively active cGAS. Nat.Struct.Mol.Biol., 30, 2023

6D0T

De novo design of a fluorescence-activating beta barrel - BB1
分子名称:	BB1
著者	Dou, J, Vorobieva, A.A, Sheffler, W, Doyle, L.A, Park, H, Bick, M.J, Mao, B, Foight, G.W, Lee, M, Carter, L, Sankaran, B, Ovchinnikov, S, Marcos, E, Huang, P, Vaughan, J.C, Stoddard, B.L, Baker, D.
登録日	2018-04-10
公開日	2018-09-19
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (1.63 Å)
主引用文献	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

6VJY

Cryo-EM structure of Hrd1/Hrd3 monomer
分子名称:	ERAD-associated E3 ubiquitin-protein ligase HRD1, ERAD-associated E3 ubiquitin-protein ligase component HRD3
著者	Wu, X, Rapoport, T.A.
登録日	2020-01-18
公開日	2020-04-29
最終更新日	2024-03-06
実験手法	ELECTRON MICROSCOPY (4.3 Å)
主引用文献	Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex. Science, 368, 2020

5V7V

Cryo-EM structure of ERAD-associated E3 ubiquitin-protein ligase component HRD3
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, ERAD-associated E3 ubiquitin-protein ligase component HRD3, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者	Mi, W, Schoebel, S, Stein, A, Rapoport, T.A, Liao, M.
登録日	2017-03-20
公開日	2017-08-16
最終更新日	2020-07-29
実験手法	ELECTRON MICROSCOPY (3.9 Å)
主引用文献	Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nature, 548, 2017

5V6P

CryoEM structure of the ERAD-associated E3 ubiquitin-protein ligase HRD1
分子名称:	ERAD-associated E3 ubiquitin-protein ligase HRD1
著者	Schoebel, S, Mi, W, Stein, A, Rapoport, T.A, Liao, M.
登録日	2017-03-17
公開日	2017-08-16
最終更新日	2024-03-13
実験手法	ELECTRON MICROSCOPY (4.1 Å)
主引用文献	Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nature, 548, 2017

6CZG

Structure of a redesigned beta barrel, b11L5F_LGL
分子名称:	b11L5F_LGL
著者	Doyle, L.A, Stoddard, B.L.
登録日	2018-04-09
公開日	2018-09-19
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

6CZJ

Structure of a redesigned beta barrel, b10
分子名称:	SULFATE ION, b10
著者	Doyle, L.A, Stoddard, B.L.
登録日	2018-04-09
公開日	2018-09-19
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	De novo design of a fluorescence-activating beta-barrel. Nature, 561, 2018

5UWB

Re-refined 4FCZ: lipid-bound crystal structure of toluene-tolerance protein from Pseudomonas putida
分子名称:	DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Toluene tolerance protein
著者	Bhabha, G, Ekiert, D.C.
登録日	2017-02-20
公開日	2017-04-19
最終更新日	2019-11-20
実験手法	X-RAY DIFFRACTION (2.604 Å)
主引用文献	Architectures of Lipid Transport Systems for the Bacterial Outer Membrane. Cell, 169, 2017

9BEI

Cryo-EM structure of synthetic claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-2, and Nanobody
分子名称:	Anti-fab nanobody, COP-2 Fab Heavy chain, COP-2 Fab Light chain, ...
著者	Vecchio, A.J.
登録日	2024-04-15
公開日	2024-04-24
最終更新日	2024-07-24
実験手法	ELECTRON MICROSCOPY (4.16 Å)
主引用文献	Computational design of soluble and functional membrane protein analogues. Nature, 631, 2024

8DT0

Scaffolding protein functional sites using deep learning
分子名称:	Scaffolding protein functional sites
著者	Bera, A.K, Watson, J, Baker, D.
登録日	2022-07-24
公開日	2022-08-10
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (2.46 Å)
主引用文献	Scaffolding protein functional sites using deep learning. Science, 377, 2022

7AA4

Structure of ClpC1-NTD bound to a CymA analogue
分子名称:	Negative regulator of genetic competence ClpC/mecB, polymer Cyclomarin A analogue
著者	Meinhart, A, Morreale, F.E, Kaiser, M, Clausen, T.
登録日	2020-09-03
公開日	2021-08-11
最終更新日	2024-01-31
実験手法	X-RAY DIFFRACTION (1.68 Å)
主引用文献	BacPROTACs mediate targeted protein degradation in bacteria. Cell, 185, 2022

7ABR

Cryo-EM structure of B. subtilis ClpC (DWB mutant) hexamer bound to a substrate polypeptide
分子名称:	ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Negative regulator of genetic competence ClpC/MecB, ...
著者	Morreale, F.E, Meinhart, A, Haselbach, D, Clausen, T.
登録日	2020-09-08
公開日	2021-10-06
最終更新日	2022-07-06
実験手法	ELECTRON MICROSCOPY (3.7 Å)
主引用文献	BacPROTACs mediate targeted protein degradation in bacteria. Cell, 185, 2022

5UVN

Structure of E. coli MCE protein PqiB, periplasmic domain
分子名称:	Paraquat-inducible protein B
著者	Bhabha, G, Ekiert, D.C.
登録日	2017-02-20
公開日	2017-04-12
最終更新日	2024-03-13
実験手法	ELECTRON MICROSCOPY (3.96 Å)
主引用文献	Architectures of Lipid Transport Systems for the Bacterial Outer Membrane. Cell, 169, 2017

5UW2

Structure of E. coli MCE protein MlaD, periplasmic domain
分子名称:	Probable phospholipid ABC transporter-binding protein MlaD, ZINC ION
著者	Bhabha, G, Ekiert, D.C.
登録日	2017-02-20
公開日	2017-04-12
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (2.85 Å)
主引用文献	Architectures of Lipid Transport Systems for the Bacterial Outer Membrane. Cell, 169, 2017

5UW8

Structure of E. coli MCE protein MlaD, core MCE domain
分子名称:	Probable phospholipid ABC transporter-binding protein MlaD
著者	Bhabha, G, Ekiert, D.C.
登録日	2017-02-20
公開日	2017-04-12
最終更新日	2024-03-06
実験手法	X-RAY DIFFRACTION (2.15 Å)
主引用文献	Architectures of Lipid Transport Systems for the Bacterial Outer Membrane. Cell, 169, 2017

7K3H

Crystal structure of deep network hallucinated protein 0217
分子名称:	Network hallucinated protein 0217
著者	Pellock, S.J, Anishchenko, I, Chidyausiku, T.M, Bera, A.K, DiMaio, F, Baker, D.
登録日	2020-09-11
公開日	2021-12-22
最終更新日	2024-04-03
実験手法	X-RAY DIFFRACTION (3 Å)
主引用文献	De novo protein design by deep network hallucination. Nature, 600, 2021

5UWA

Structure of E. coli phospholipid binding protein MlaC
分子名称:	(2S)-3-(2-aminoethoxy)propane-1,2-diyl dihexadecanoate, Probable phospholipid-binding protein MlaC
著者	Bhabha, G, Ekiert, D.C.
登録日	2017-02-20
公開日	2017-04-12
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (1.501 Å)
主引用文献	Architectures of Lipid Transport Systems for the Bacterial Outer Membrane. Cell, 169, 2017

8UBH

Solution NMR structure of KaiB variant from Thermosynechococcus elongatus vestitus (KaiBTV-4)
分子名称:	Circadian oscillation regulator
著者	Ojoawo, A, Wayment-Steele, H.K, Kern, D.
登録日	2023-09-23
公開日	2023-10-25
最終更新日	2024-05-15
実験手法	SOLUTION NMR
主引用文献	Predicting multiple conformations via sequence clustering and AlphaFold2. Nature, 625, 2024

8SK7

Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HA_20 minibinder (RFdiffusion-designed), ...
著者	Borst, A.J, Bennett, N.R.
登録日	2023-04-18
公開日	2023-06-14
最終更新日	2023-09-13
実験手法	ELECTRON MICROSCOPY (2.93 Å)
主引用文献	De novo design of protein structure and function with RFdiffusion. Nature, 620, 2023

7DCN

Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
分子名称:	Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, SULFATE ION, ZINC ION
著者	Xu, H, Wang, B, Su, X.D.
登録日	2020-10-26
公開日	2021-11-03
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (1.695 Å)
主引用文献	Co-evolution-based prediction of metal-binding sites in proteomes by machine learning. Nat.Chem.Biol., 19, 2023

7DCM

Crystal structure of CITX
分子名称:	Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, ZINC ION
著者	Xu, H, Wang, B, Su, X.D.
登録日	2020-10-26
公開日	2021-11-03
最終更新日	2023-05-17
実験手法	X-RAY DIFFRACTION (2.495 Å)
主引用文献	Co-evolution-based prediction of metal-binding sites in proteomes by machine learning. Nat.Chem.Biol., 19, 2023

8OYS

De novo designed TIM barrel fold TBF_24
分子名称:	CHLORIDE ION, De novo designed TIM-barrel
著者	Pacesa, M, Correia, B.E.
登録日	2023-05-05
公開日	2023-10-18
最終更新日	2024-03-27
実験手法	X-RAY DIFFRACTION (1.34 Å)
主引用文献	Computational design of soluble functional analogues of integral membrane proteins. Biorxiv, 2024

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