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PDB: 320 results

1F2I
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COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA
Descriptor: 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3', FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12, ZINC ION
Authors:Wang, B.S, Grant, R.A, Pabo, C.O.
Deposit date:2000-05-25
Release date:2001-09-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA.
Nat.Struct.Biol., 8, 2001
8C7B
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Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
6P3W
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BU of 6p3w by Molmil
Crystal structure of the Cyclin A-CDK2-ORC1 complex
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2, ORC1 Peptide, ...
Authors:Wang, B, Song, J.
Deposit date:2019-05-24
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structural basis for the ORC1-Cyclin A association.
Protein Sci., 28, 2019
8C7A
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BU of 8c7a by Molmil
Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
Descriptor: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
Authors:Wang, B, Zalar, M, Plavec, J, Sket, P.
Deposit date:2023-01-14
Release date:2023-11-22
Method:SOLUTION NMR
Cite:Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
6TR2
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BU of 6tr2 by Molmil
Pre-folded structures govern folding pathways of human telomeric G-quadruplexes
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
Authors:Wang, B, Frelih, T, Plavec, J, Sket, P.
Deposit date:2019-12-17
Release date:2020-01-01
Last modified:2020-07-15
Method:SOLUTION NMR
Cite:Pre-folded structures govern folding pathways of human telomeric G-quadruplexes.
Nucleic Acids Res., 48, 2020
1FFO
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CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH SYNTHETIC PEPTIDE GP33 (C9M/K1A)
Descriptor: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Peptidic termini play a significant role in TCR recognition.
J.Immunol., 169, 2002
1FFN
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BU of 1ffn by Molmil
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33(C9M)
Descriptor: BETA-2 MICROGLOBULIN, BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Peptidic termini play a significant role in TCR recognition
J.IMMUNOL., 169, 2002
1FFP
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CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH PEPTIDE GP33 (C9M/K1S)
Descriptor: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Peptidic termini play a significant role in TCR recognition
J.IMMUNOL., 169, 2002
8GNH
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Complex structure of BD-218 and Spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of BD-218, ...
Authors:Wang, B, Xu, H, Su, X.D.
Deposit date:2022-08-23
Release date:2023-08-30
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Human antibody BD-218 has broad neutralizing activity against concerning variants of SARS-CoV-2.
Int.J.Biol.Macromol., 227, 2023
1NJ3
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Structure and Ubiquitin Interactions of the Conserved NZF Domain of Npl4
Descriptor: NPL4, ZINC ION
Authors:Wang, B, Alam, S.L, Meyer, H.H, Payne, M, Stemmler, T.L, Davis, D.R, Sundquist, W.I.
Deposit date:2002-12-30
Release date:2003-04-22
Last modified:2017-11-22
Method:SOLUTION NMR
Cite:Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4.
J.Biol.Chem., 278, 2003
6VWP
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Crystal structure of E. coli guanosine kinase in complex with ppGpp
Descriptor: GUANOSINE, GUANOSINE-5',3'-TETRAPHOSPHATE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
6UX2
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BU of 6ux2 by Molmil
Crystal structure of ZIKV RdRp in complex with STAT2
Descriptor: Nonstructural Protein 5, SULFATE ION, Signal transducer and activator of transcription 2, ...
Authors:Wang, B, Song, J.
Deposit date:2019-11-06
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for STAT2 suppression by flavivirus NS5.
Nat.Struct.Mol.Biol., 27, 2020
1QYP
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BU of 1qyp by Molmil
THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES
Descriptor: RNA POLYMERASE II, ZINC ION
Authors:Wang, B, Jones, D.N.M, Kaine, B.P, Weiss, M.A.
Deposit date:1997-08-19
Release date:1997-12-24
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases.
Structure, 6, 1998
6CZF
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BU of 6czf by Molmil
The structure of E. coli PurF in complex with ppGpp-Mg
Descriptor: Amidophosphoribosyltransferase, GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2018-04-09
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Affinity-based capture and identification of protein effectors of the growth regulator ppGpp.
Nat. Chem. Biol., 15, 2019
5J62
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BU of 5j62 by Molmil
FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, PHOSPHATE ION, ...
Authors:Wang, B, Powell, S.M, Hessami, N, Najar, F.Z, Thomas, L.M, West, A.H, Karr, E.A, Richter-Addo, G.B.
Deposit date:2016-04-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.
Nitric Oxide, 60, 2016
5ILE
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BU of 5ile by Molmil
H64A sperm whale myoglobin with a Fe-tolyl moiety
Descriptor: Myoglobin, SULFATE ION, [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)](3-methylphenyl)iron
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-03
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILP
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BU of 5ilp by Molmil
H64Q sperm whale myoglobin with a Fe-tolyl moiety
Descriptor: GLYCEROL, Myoglobin, SULFATE ION, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5IKS
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BU of 5iks by Molmil
Wild-type sperm whale myoglobin with a Fe-phenyl moiety
Descriptor: GLYCEROL, Myoglobin, SULFATE ION, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-03
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILM
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BU of 5ilm by Molmil
H64A sperm whale myoglobin with a Fe-chlorophenyl moiety
Descriptor: (4-chlorophenyl)[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)]iron, GLYCEROL, Myoglobin, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5ILR
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BU of 5ilr by Molmil
H64Q sperm whale myoglobin with a Fe-chlorophenyl moiety
Descriptor: (4-chlorophenyl)[3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)di(propanoato)(2-)]iron, GLYCEROL, Myoglobin, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-03-04
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations.
J. Inorg. Biochem., 164, 2016
5KD1
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BU of 5kd1 by Molmil
Sperm whale myoglobin H64A with nitrosoamphetamine
Descriptor: GLYCEROL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Wang, B, Guan, Y, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2016-06-07
Release date:2017-05-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nitrosoamphetamine binding to myoglobin and hemoglobin: Crystal structure of the H64A myoglobin-nitrosoamphetamine adduct.
Nitric Oxide, 67, 2017
7T1Y
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BU of 7t1y by Molmil
Structure of the Fbw7-Skp1-MycCdegron complex
Descriptor: F-box/WD repeat-containing protein 7, Myc proto-oncogene protein C terminal degron, S-phase kinase-associated protein 1, ...
Authors:Wang, B, Rusnac, D.V, Clurman, B.E, Zheng, N.
Deposit date:2021-12-02
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor.
Sci Adv, 8, 2022
7T1Z
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BU of 7t1z by Molmil
Structure of the Fbw7-Skp1-MycNdegron complex
Descriptor: F-box/WD repeat-containing protein 7, Myc proto-oncogene N terminal degron, S-phase kinase-associated protein 1, ...
Authors:Wang, B, Rusnac, D.V, Clurman, B.E, Zheng, N.
Deposit date:2021-12-02
Release date:2022-02-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Two diphosphorylated degrons control c-Myc degradation by the Fbw7 tumor suppressor.
Sci Adv, 8, 2022
6VWO
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Crystal structure of E. coli guanosine kinase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE, Inosine-guanosine kinase, ...
Authors:Wang, B, Grant, R.A, Laub, M.T.
Deposit date:2020-02-20
Release date:2020-10-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:ppGpp Coordinates Nucleotide and Amino-Acid Synthesis in E. coli During Starvation.
Mol.Cell, 80, 2020
5B1Q
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Human herpesvirus 6B tegument protein U14
Descriptor: GLYCEROL, U14 protein
Authors:Wang, B, Nishimura, M, Tang, H, Kawabata, A, Mahmoud, N.F, Khanlari, Z, Hamada, D, Tsuruta, H, Mori, Y.
Deposit date:2015-12-11
Release date:2016-04-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Human Herpesvirus 6B Tegument Protein U14.
Plos Pathog., 12, 2016

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