+Open data
-Basic information
Entry | Database: PDB / ID: 1e8l | |||||||||
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Title | NMR solution structure of hen lysozyme | |||||||||
Components | LYSOZYME | |||||||||
Keywords | HYDROLASE | |||||||||
Function / homology | Function and homology information Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to Gram-negative bacterium / defense response to Gram-positive bacterium / defense response to bacterium ...Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to Gram-negative bacterium / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function | |||||||||
Biological species | GALLUS GALLUS (chicken) | |||||||||
Method | SOLUTION NMR / simulated annealing | |||||||||
Authors | Schwalbe, H. / Grimshaw, S.B. / Spencer, A. / Buck, M. / Boyd, J. / Dobson, C.M. / Redfield, C. / Smith, L.J. | |||||||||
Citation | Journal: Protein Sci. / Year: 2001 Title: A refined solution structure of hen lysozyme determined using residual dipolar coupling data. Authors: Schwalbe, H. / Grimshaw, S.B. / Spencer, A. / Buck, M. / Boyd, J. / Dobson, C.M. / Redfield, C. / Smith, L.J. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1e8l.cif.gz | 1.8 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1e8l.ent.gz | 1.6 MB | Display | PDB format |
PDBx/mmJSON format | 1e8l.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/e8/1e8l ftp://data.pdbj.org/pub/pdb/validation_reports/e8/1e8l | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 14331.160 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) GALLUS GALLUS (chicken) / Cellular location: EGG WHITE / Production host: ASPERGILLUS NIGER (mold) / Strain (production host): TRANSFORMANT B1 / References: UniProt: P00698, lysozyme |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: NOE DATA FROM EXPERIMENTS ON 13C,15N-LABELED SAMPLE. STRUCTURES REFINED USING 209 RESIDUAL 1H-15N DIPOLAR COUPLING RESTRAINTS FROM MEASUREMENTS MADE IN TWO DIFFERENT LIQUID CRYSTALLINE PHASES. |
-Sample preparation
Sample conditions | pH: 3.8 / Pressure: 1 atm / Temperature: 308 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: DETAILS OF THE NMR DATA USED IN THE STRUCTURE CALCULATIONS ARE AS FOLLOWS NUMBER OF RESTRAINTS NOE DISTANCE RESTRAINTS 1632 HYDROGEN BOND RESTRAINTS 60 DIHEDRAL ANGLE PHI RESTRAINTS 51 ...Details: DETAILS OF THE NMR DATA USED IN THE STRUCTURE CALCULATIONS ARE AS FOLLOWS NUMBER OF RESTRAINTS NOE DISTANCE RESTRAINTS 1632 HYDROGEN BOND RESTRAINTS 60 DIHEDRAL ANGLE PHI RESTRAINTS 51 DIHEDRAL ANGLE CHI 1 RESTRAINTS 59 RESIDUAL DIPOLAR COUPLING RESTRAINTS 209 RMS DEVIATIONS FROM EXPERIMENTAL RESTRAINTS NOE RESTRAINTS (ANGSTROMS) 0.0439 DIHEDRAL RESTRAINTS (DEGREES) 0.655 DIPOLAR COUPLING RESTRAINTS (HZ) 1.159 RMS DEVIATIONS FROM IDEAL COVALENT GEOMETRY BONDS (ANGSTROMS) 0.00333 ANGLES (DEGREES) 0.492 IMPROPERS (DEGREES) 0.384 | |||||||||
NMR ensemble | Conformer selection criteria: LOWEST ENERGY / Conformers calculated total number: 300 / Conformers submitted total number: 50 |