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Yorodumi- PDB-4dz4: X-ray crystal structure of a hypothetical Agmatinase from Burkhol... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 4dz4 | |||||||||
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| Title | X-ray crystal structure of a hypothetical Agmatinase from Burkholderia thailandensis | |||||||||
Components | Agmatinase | |||||||||
Keywords | HYDROLASE / Agmatinase / Structural Genomics / Seattle Structural Genomics Center for Infectious Disease / SSGCID | |||||||||
| Function / homology | Function and homology informationagmatinase / putrescine biosynthetic process from arginine, via agmatine / agmatinase activity / metal ion binding Similarity search - Function | |||||||||
| Biological species | Burkholderia thailandensis (bacteria) | |||||||||
| Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 1.7 Å | |||||||||
Authors | Seattle Structural Genomics Center for Infectious Disease (SSGCID) | |||||||||
Citation | Journal: Plos One / Year: 2013Title: Combining functional and structural genomics to sample the essential Burkholderia structome. Authors: Baugh, L. / Gallagher, L.A. / Patrapuvich, R. / Clifton, M.C. / Gardberg, A.S. / Edwards, T.E. / Armour, B. / Begley, D.W. / Dieterich, S.H. / Dranow, D.M. / Abendroth, J. / Fairman, J.W. / ...Authors: Baugh, L. / Gallagher, L.A. / Patrapuvich, R. / Clifton, M.C. / Gardberg, A.S. / Edwards, T.E. / Armour, B. / Begley, D.W. / Dieterich, S.H. / Dranow, D.M. / Abendroth, J. / Fairman, J.W. / Fox, D. / Staker, B.L. / Phan, I. / Gillespie, A. / Choi, R. / Nakazawa-Hewitt, S. / Nguyen, M.T. / Napuli, A. / Barrett, L. / Buchko, G.W. / Stacy, R. / Myler, P.J. / Stewart, L.J. / Manoil, C. / Van Voorhis, W.C. | |||||||||
| History |
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 4dz4.cif.gz | 740.2 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb4dz4.ent.gz | 615 KB | Display | PDB format |
| PDBx/mmJSON format | 4dz4.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 4dz4_validation.pdf.gz | 494.8 KB | Display | wwPDB validaton report |
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| Full document | 4dz4_full_validation.pdf.gz | 510.9 KB | Display | |
| Data in XML | 4dz4_validation.xml.gz | 98.8 KB | Display | |
| Data in CIF | 4dz4_validation.cif.gz | 138.4 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dz/4dz4 ftp://data.pdbj.org/pub/pdb/validation_reports/dz/4dz4 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 3d63C ![]() 3dahC ![]() 3eizC ![]() 3ej2C ![]() 3ek2C ![]() 3ezoC ![]() 3f0fC ![]() 3ftpC ![]() 3gk0C ![]() 3gk3C ![]() 3gvfC ![]() 3gwaC ![]() 3gweC ![]() 3imlC ![]() 3sz8C ![]() 3t4cC ![]() 3tmlC ![]() 3tmqC ![]() 3txyC ![]() 3u7jC ![]() 3ue9C ![]() 3uk1C ![]() 3uk2C ![]() 3undC ![]() 3uptC ![]() 3urrC ![]() 3uw1C ![]() 3uw2C ![]() 3uw3C ![]() 3v2iC ![]() 3v7nC ![]() 3v8hC ![]() 3v9oC ![]() 3v9pC ![]() 3vavC ![]() 4ddoC ![]() 4dfeC ![]() 4dheC ![]() 4dhkC ![]() 4dutC ![]() 4e4tC ![]() 4efiC ![]() 4eg0C ![]() 4egjC ![]() 4ek2C ![]() 4eqyC ![]() 4ewgC ![]() 4exqC ![]() 4f2gC ![]() 4f32C ![]() 4f3nC ![]() 4f3yC ![]() 4f4hC ![]() 4f7dC ![]() 4fk8C ![]() 4fryC ![]() 4g1kC ![]() 4g67C ![]() 4ghkC ![]() 4h3yC ![]() 4h3zC ![]() 4h4gC C: citing same article ( |
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| Similar structure data | |
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Links
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Assembly
| Deposited unit | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Refine code: _
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About Yorodumi



Burkholderia thailandensis (bacteria)
X-RAY DIFFRACTION
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